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Salvaging Affymetrix probes after probe-level re-annotation.
de Leeuw WC, Rauwerda H, Jonker MJ, Breit TM. de Leeuw WC, et al. Among authors: rauwerda h. BMC Res Notes. 2008 Aug 19;1:66. doi: 10.1186/1756-0500-1-66. BMC Res Notes. 2008. PMID: 18710586 Free PMC article.
SigWinR; the SigWin-detector updated and ported to R.
de Leeuw WC, Rauwerda H, Inda MA, Bruning O, Breit TM. de Leeuw WC, et al. Among authors: rauwerda h. BMC Res Notes. 2009 Oct 6;2:205. doi: 10.1186/1756-0500-2-205. BMC Res Notes. 2009. PMID: 19807919 Free PMC article.
Using R in Taverna: RShell v1.2.
Wassink I, Rauwerda H, Neerincx PB, van der Vet PE, Breit TM, Leunissen JA, Nijholt A. Wassink I, et al. Among authors: rauwerda h. BMC Res Notes. 2009 Jul 16;2:138. doi: 10.1186/1756-0500-2-138. BMC Res Notes. 2009. PMID: 19607662 Free PMC article.
Improving small RNA-seq by using a synthetic spike-in set for size-range quality control together with a set for data normalization.
Locati MD, Terpstra I, de Leeuw WC, Kuzak M, Rauwerda H, Ensink WA, van Leeuwen S, Nehrdich U, Spaink HP, Jonker MJ, Breit TM, Dekker RJ. Locati MD, et al. Among authors: rauwerda h. Nucleic Acids Res. 2015 Aug 18;43(14):e89. doi: 10.1093/nar/gkv303. Epub 2015 Apr 13. Nucleic Acids Res. 2015. PMID: 25870415 Free PMC article.
Valuable lessons-learned in transcriptomics experimentation.
Bruning O, Rauwerda H, Dekker RJ, de Leeuw WC, Wackers PF, Ensink WA, Jonker MJ, Breit TM. Bruning O, et al. Among authors: rauwerda h. Transcription. 2015;6(3):51-5. doi: 10.1080/21541264.2015.1064195. Transcription. 2015. PMID: 26098945 Free PMC article. Review.
27 results