Yuan GC - Search Results

1

A multi-layer method to study genome-scale positions of nucleosomes.

Di Gesù V, Lo Bosco G, Pinello L, Yuan GC, Corona DF. Di Gesù V, et al. Among authors: yuan gc. Genomics. 2009 Feb;93(2):140-5. doi: 10.1016/j.ygeno.2008.09.012. Epub 2008 Nov 21. Genomics. 2009. PMID: 18951969 Free article.

2

A motif-independent metric for DNA sequence specificity.

Pinello L, Lo Bosco G, Hanlon B, Yuan GC. Pinello L, et al. Among authors: yuan gc. BMC Bioinformatics. 2011 Oct 21;12:408. doi: 10.1186/1471-2105-12-408. BMC Bioinformatics. 2011. PMID: 22017798 Free PMC article.

3

A tiered hidden Markov model characterizes multi-scale chromatin states.

Larson JL, Huttenhower C, Quackenbush J, Yuan GC. Larson JL, et al. Among authors: yuan gc. Genomics. 2013 Jul;102(1):1-7. doi: 10.1016/j.ygeno.2013.03.009. Epub 2013 Apr 6. Genomics. 2013. PMID: 23570996 Free PMC article.

4

Applications of alignment-free methods in epigenomics.

Pinello L, Lo Bosco G, Yuan GC. Pinello L, et al. Among authors: yuan gc. Brief Bioinform. 2014 May;15(3):419-30. doi: 10.1093/bib/bbt078. Epub 2013 Nov 6. Brief Bioinform. 2014. PMID: 24197932 Free PMC article. Review.

5

Analysis of chromatin-state plasticity identifies cell-type-specific regulators of H3K27me3 patterns.

Pinello L, Xu J, Orkin SH, Yuan GC. Pinello L, et al. Among authors: yuan gc. Proc Natl Acad Sci U S A. 2014 Jan 21;111(3):E344-53. doi: 10.1073/pnas.1322570111. Epub 2014 Jan 6. Proc Natl Acad Sci U S A. 2014. PMID: 24395799 Free PMC article.

6

Predicting chromatin organization using histone marks.

Huang J, Marco E, Pinello L, Yuan GC. Huang J, et al. Among authors: yuan gc. Genome Biol. 2015 Aug 14;16(1):162. doi: 10.1186/s13059-015-0740-z. Genome Biol. 2015. PMID: 26272203 Free PMC article.

7

Functionally distinct patterns of nucleosome remodeling at enhancers in glucocorticoid-treated acute lymphoblastic leukemia.

Wu JN, Pinello L, Yissachar E, Wischhusen JW, Yuan GC, Roberts CWM. Wu JN, et al. Among authors: yuan gc. Epigenetics Chromatin. 2015 Dec 2;8:53. doi: 10.1186/s13072-015-0046-0. eCollection 2015. Epigenetics Chromatin. 2015. PMID: 26633995 Free PMC article.

8

GiniClust: detecting rare cell types from single-cell gene expression data with Gini index.

Jiang L, Chen H, Pinello L, Yuan GC. Jiang L, et al. Among authors: yuan gc. Genome Biol. 2016 Jul 1;17(1):144. doi: 10.1186/s13059-016-1010-4. Genome Biol. 2016. PMID: 27368803 Free PMC article.

9

Analyzing CRISPR genome-editing experiments with CRISPResso.

Pinello L, Canver MC, Hoban MD, Orkin SH, Kohn DB, Bauer DE, Yuan GC. Pinello L, et al. Among authors: yuan gc. Nat Biotechnol. 2016 Jul 12;34(7):695-7. doi: 10.1038/nbt.3583. Nat Biotechnol. 2016. PMID: 27404874 Free PMC article. No abstract available.

10

Identification of Transcribed Enhancers by Genome-Wide Chromatin Immunoprecipitation Sequencing.

Blinka S, Reimer MH Jr, Pulakanti K, Pinello L, Yuan GC, Rao S. Blinka S, et al. Among authors: yuan gc. Methods Mol Biol. 2017;1468:91-109. doi: 10.1007/978-1-4939-4035-6_8. Methods Mol Biol. 2017. PMID: 27662872 Free PMC article.

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