Johnson JM - Search Results

1

Expression of 24,426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines.

Castle JC, Zhang C, Shah JK, Kulkarni AV, Kalsotra A, Cooper TA, Johnson JM. Castle JC, et al. Among authors: johnson jm. Nat Genet. 2008 Dec;40(12):1416-25. doi: 10.1038/ng.264. Epub 2008 Nov 2. Nat Genet. 2008. PMID: 18978788 Free PMC article.

2

Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs.

Lim LP, Lau NC, Garrett-Engele P, Grimson A, Schelter JM, Castle J, Bartel DP, Linsley PS, Johnson JM. Lim LP, et al. Among authors: johnson jm. Nature. 2005 Feb 17;433(7027):769-73. doi: 10.1038/nature03315. Epub 2005 Jan 30. Nature. 2005. PMID: 15685193 Free article.

3

Evolutionarily conserved and diverged alternative splicing events show different expression and functional profiles.

Kan Z, Garrett-Engele PW, Johnson JM, Castle JC. Kan Z, et al. Among authors: johnson jm. Nucleic Acids Res. 2005 Sep 29;33(17):5659-66. doi: 10.1093/nar/gki834. Print 2005. Nucleic Acids Res. 2005. PMID: 16195578 Free PMC article.

4

Digital transcriptome profiling using selective hexamer priming for cDNA synthesis.

Armour CD, Castle JC, Chen R, Babak T, Loerch P, Jackson S, Shah JK, Dey J, Rohl CA, Johnson JM, Raymond CK. Armour CD, et al. Among authors: johnson jm. Nat Methods. 2009 Sep;6(9):647-9. doi: 10.1038/nmeth.1360. Epub 2009 Aug 9. Nat Methods. 2009. PMID: 19668204

5

Optimization of oligonucleotide arrays and RNA amplification protocols for analysis of transcript structure and alternative splicing.

Castle J, Garrett-Engele P, Armour CD, Duenwald SJ, Loerch PM, Meyer MR, Schadt EE, Stoughton R, Parrish ML, Shoemaker DD, Johnson JM. Castle J, et al. Among authors: johnson jm. Genome Biol. 2003;4(10):R66. doi: 10.1186/gb-2003-4-10-r66. Epub 2003 Sep 19. Genome Biol. 2003. PMID: 14519201 Free PMC article.

6

Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays.

Johnson JM, Castle J, Garrett-Engele P, Kan Z, Loerch PM, Armour CD, Santos R, Schadt EE, Stoughton R, Shoemaker DD. Johnson JM, et al. Science. 2003 Dec 19;302(5653):2141-4. doi: 10.1126/science.1090100. Science. 2003. PMID: 14684825

7

Pathway and gene-set activation measurement from mRNA expression data: the tissue distribution of human pathways.

Levine DM, Haynor DR, Castle JC, Stepaniants SB, Pellegrini M, Mao M, Johnson JM. Levine DM, et al. Among authors: johnson jm. Genome Biol. 2006;7(10):R93. doi: 10.1186/gb-2006-7-10-r93. Epub 2006 Oct 17. Genome Biol. 2006. PMID: 17044931 Free PMC article.

8

Exon and junction microarrays detect widespread mouse strain- and sex-bias expression differences.

Su WL, Modrek B, GuhaThakurta D, Edwards S, Shah JK, Kulkarni AV, Russell A, Schadt EE, Johnson JM, Castle JC. Su WL, et al. Among authors: johnson jm. BMC Genomics. 2008 Jun 4;9:273. doi: 10.1186/1471-2164-9-273. BMC Genomics. 2008. PMID: 18533039 Free PMC article.

9

A postnatal switch of CELF and MBNL proteins reprograms alternative splicing in the developing heart.

Kalsotra A, Xiao X, Ward AJ, Castle JC, Johnson JM, Burge CB, Cooper TA. Kalsotra A, et al. Among authors: johnson jm. Proc Natl Acad Sci U S A. 2008 Dec 23;105(51):20333-8. doi: 10.1073/pnas.0809045105. Epub 2008 Dec 15. Proc Natl Acad Sci U S A. 2008. PMID: 19075228 Free PMC article.

10

ACC2 is expressed at high levels in human white adipose and has an isoform with a novel N-terminus [corrected].

Castle JC, Hara Y, Raymond CK, Garrett-Engele P, Ohwaki K, Kan Z, Kusunoki J, Johnson JM. Castle JC, et al. Among authors: johnson jm. PLoS One. 2009;4(2):e4369. doi: 10.1371/journal.pone.0004369. Epub 2009 Feb 3. PLoS One. 2009. PMID: 19190759 Free PMC article.

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