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A nonlinear dynamic model of DNA with a sequence-dependent stacking term.
Alexandrov BS, Gelev V, Monisova Y, Alexandrov LB, Bishop AR, Rasmussen KØ, Usheva A. Alexandrov BS, et al. Among authors: bishop ar. Nucleic Acids Res. 2009 Apr;37(7):2405-10. doi: 10.1093/nar/gkp016. Epub 2009 Mar 5. Nucleic Acids Res. 2009. PMID: 19264801 Free PMC article.
DNA dynamically directs its own transcription initiation.
Choi CH, Kalosakas G, Rasmussen KO, Hiromura M, Bishop AR, Usheva A. Choi CH, et al. Among authors: bishop ar. Nucleic Acids Res. 2004 Mar 5;32(4):1584-90. doi: 10.1093/nar/gkh335. Print 2004. Nucleic Acids Res. 2004. PMID: 15004245 Free PMC article.
The role of structural parameters in DNA cyclization.
Alexandrov LB, Bishop AR, Rasmussen KØ, Alexandrov BS. Alexandrov LB, et al. Among authors: bishop ar. BMC Bioinformatics. 2016 Feb 4;17:68. doi: 10.1186/s12859-016-0897-9. BMC Bioinformatics. 2016. PMID: 26846597 Free PMC article.
Healing length and bubble formation in DNA.
Rapti Z, Smerzi A, Rasmussen KO, Bishop AR, Choi CH, Usheva A. Rapti Z, et al. Among authors: bishop ar. Phys Rev E Stat Nonlin Soft Matter Phys. 2006 May;73(5 Pt 1):051902. doi: 10.1103/PhysRevE.73.051902. Epub 2006 May 4. Phys Rev E Stat Nonlin Soft Matter Phys. 2006. PMID: 16802962
Bubble statistics and dynamics in double-stranded DNA.
Alexandrov BS, Wille LT, Rasmussen KØ, Bishop AR, Blagoev KB. Alexandrov BS, et al. Among authors: bishop ar. Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Nov;74(5 Pt 1):050901. doi: 10.1103/PhysRevE.74.050901. Epub 2006 Nov 1. Phys Rev E Stat Nonlin Soft Matter Phys. 2006. PMID: 17279870
Feigenbaum cascade of discrete breathers in a model of DNA.
Maniadis P, Alexandrov BS, Bishop AR, Rasmussen KØ. Maniadis P, et al. Among authors: bishop ar. Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Jan;83(1 Pt 1):011904. doi: 10.1103/PhysRevE.83.011904. Epub 2011 Jan 11. Phys Rev E Stat Nonlin Soft Matter Phys. 2011. PMID: 21405710
283 results