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A fast coarse filtering method for peptide identification by mass spectrometry.
Ramakrishnan SR, Mao R, Nakorchevskiy AA, Prince JT, Willard WS, Xu W, Marcotte EM, Miranker DP. Ramakrishnan SR, et al. Among authors: miranker dp. Bioinformatics. 2006 Jun 15;22(12):1524-31. doi: 10.1093/bioinformatics/btl118. Epub 2006 Apr 3. Bioinformatics. 2006. PMID: 16585069
A metric model of amino acid substitution.
Xu W, Miranker DP. Xu W, et al. Among authors: miranker dp. Bioinformatics. 2004 May 22;20(8):1214-21. doi: 10.1093/bioinformatics/bth065. Epub 2004 Feb 10. Bioinformatics. 2004. PMID: 14871874
An Accurate Scalable Template-based Alignment Algorithm.
Gardner DP, Xu W, Miranker DP, Ozer S, Cannone JJ, Gutell RR. Gardner DP, et al. Among authors: miranker dp. Proceedings (IEEE Int Conf Bioinformatics Biomed). 2012 Dec 31;2012:1-7. doi: 10.1109/BIBM.2012.6392676. Proceedings (IEEE Int Conf Bioinformatics Biomed). 2012. PMID: 24772376 Free PMC article.
R-PASS: A Fast Structure-based RNA Sequence Alignment Algorithm.
Jiang Y, Xu W, Thompson LP, Gutell RR, Miranker DP. Jiang Y, et al. Among authors: miranker dp. Proceedings (IEEE Int Conf Bioinformatics Biomed). 2011 Dec 31;2011:618-622. doi: 10.1109/BIBM.2011.74. Proceedings (IEEE Int Conf Bioinformatics Biomed). 2011. PMID: 24772375 Free PMC article.
15 results