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flowCore: a Bioconductor package for high throughput flow cytometry.
Hahne F, LeMeur N, Brinkman RR, Ellis B, Haaland P, Sarkar D, Spidlen J, Strain E, Gentleman R. Hahne F, et al. BMC Bioinformatics. 2009 Apr 9;10:106. doi: 10.1186/1471-2105-10-106. BMC Bioinformatics. 2009. PMID: 19358741 Free PMC article.
Orchestrating high-throughput genomic analysis with Bioconductor.
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Huber W, et al. Among authors: hahne f. Nat Methods. 2015 Feb;12(2):115-21. doi: 10.1038/nmeth.3252. Nat Methods. 2015. PMID: 25633503 Free PMC article. Review.
Per-channel basis normalization methods for flow cytometry data.
Hahne F, Khodabakhshi AH, Bashashati A, Wong CJ, Gascoyne RD, Weng AP, Seyfert-Margolis V, Bourcier K, Asare A, Lumley T, Gentleman R, Brinkman RR. Hahne F, et al. Cytometry A. 2010 Feb;77(2):121-31. doi: 10.1002/cyto.a.20823. Cytometry A. 2010. PMID: 19899135 Free PMC article.
Analysis of High-Throughput Flow Cytometry Data Using plateCore.
Strain E, Hahne F, Brinkman RR, Haaland P. Strain E, et al. Among authors: hahne f. Adv Bioinformatics. 2009;2009:356141. doi: 10.1155/2009/356141. Epub 2009 Oct 11. Adv Bioinformatics. 2009. PMID: 19956418 Free PMC article.
QuasR: quantification and annotation of short reads in R.
Gaidatzis D, Lerch A, Hahne F, Stadler MB. Gaidatzis D, et al. Among authors: hahne f. Bioinformatics. 2015 Apr 1;31(7):1130-2. doi: 10.1093/bioinformatics/btu781. Epub 2014 Nov 21. Bioinformatics. 2015. PMID: 25417205 Free PMC article.
36 results