Sarkar D - Search Results

1

flowCore: a Bioconductor package for high throughput flow cytometry.

Hahne F, LeMeur N, Brinkman RR, Ellis B, Haaland P, Sarkar D, Spidlen J, Strain E, Gentleman R. Hahne F, et al. Among authors: sarkar d. BMC Bioinformatics. 2009 Apr 9;10:106. doi: 10.1186/1471-2105-10-106. BMC Bioinformatics. 2009. PMID: 19358741 Free PMC article.

2

Coverage and error models of protein-protein interaction data by directed graph analysis.

Chiang T, Scholtens D, Sarkar D, Gentleman R, Huber W. Chiang T, et al. Among authors: sarkar d. Genome Biol. 2007;8(9):R186. doi: 10.1186/gb-2007-8-9-r186. Genome Biol. 2007. PMID: 17845715 Free PMC article.

3

Using flowViz to visualize flow cytometry data.

Sarkar D, Le Meur N, Gentleman R. Sarkar D, et al. Bioinformatics. 2008 Mar 15;24(6):878-9. doi: 10.1093/bioinformatics/btn021. Epub 2008 Feb 1. Bioinformatics. 2008. PMID: 18245128 Free PMC article.

4

Quality assessment and data analysis for microRNA expression arrays.

Sarkar D, Parkin R, Wyman S, Bendoraite A, Sather C, Delrow J, Godwin AK, Drescher C, Huber W, Gentleman R, Tewari M. Sarkar D, et al. Nucleic Acids Res. 2009 Feb;37(2):e17. doi: 10.1093/nar/gkn932. Epub 2008 Dec 22. Nucleic Acids Res. 2009. PMID: 19103660 Free PMC article.

5

iFlow: A Graphical User Interface for Flow Cytometry Tools in Bioconductor.

Lee K, Hahne F, Sarkar D, Gentleman R. Lee K, et al. Among authors: sarkar d. Adv Bioinformatics. 2009;2009:103839. doi: 10.1155/2009/103839. Epub 2009 Nov 12. Adv Bioinformatics. 2009. PMID: 20049160 Free PMC article.

6

Genome-wide MyoD binding in skeletal muscle cells: a potential for broad cellular reprogramming.

Cao Y, Yao Z, Sarkar D, Lawrence M, Sanchez GJ, Parker MH, MacQuarrie KL, Davison J, Morgan MT, Ruzzo WL, Gentleman RC, Tapscott SJ. Cao Y, et al. Among authors: sarkar d. Dev Cell. 2010 Apr 20;18(4):662-74. doi: 10.1016/j.devcel.2010.02.014. Dev Cell. 2010. PMID: 20412780 Free PMC article.

7

An integrative genomic approach identifies p73 and p63 as activators of miR-200 microRNA family transcription.

Knouf EC, Garg K, Arroyo JD, Correa Y, Sarkar D, Parkin RK, Wurz K, O'Briant KC, Godwin AK, Urban ND, Ruzzo WL, Gentleman R, Drescher CW, Swisher EM, Tewari M. Knouf EC, et al. Among authors: sarkar d. Nucleic Acids Res. 2012 Jan;40(2):499-510. doi: 10.1093/nar/gkr731. Epub 2011 Sep 14. Nucleic Acids Res. 2012. PMID: 21917857 Free PMC article.

8

nhanesA: achieving transparency and reproducibility in NHANES research.

Ale L, Gentleman R, Sonmez TF, Sarkar D, Endres C. Ale L, et al. Among authors: sarkar d. Database (Oxford). 2024 Apr 15;2024:baae028. doi: 10.1093/database/baae028. Database (Oxford). 2024. PMID: 38625809 Free PMC article.

9

Inferring gene-pathway associations from consolidated transcriptome datasets: an interactive gene network explorer for Tetrahymena thermophila.

Bertagna MA, Bright LJ, Ye F, Jiang YY, Sarkar D, Pradhan A, Kumar S, Gao S, Turkewitz AP, Tsypin LMZ. Bertagna MA, et al. Among authors: sarkar d. bioRxiv [Preprint]. 2024 Dec 17:2024.12.12.627356. doi: 10.1101/2024.12.12.627356. bioRxiv. 2024. PMID: 39713406 Free PMC article. Preprint.

10

Organic electro-scattering antenna: Wireless and multisite probing of electrical potentials with high spatial resolution.

Desbiolles B, Hanna J, Ausilio R, Leccardi MA, Yu Y, Sarkar D. Desbiolles B, et al. Among authors: sarkar d. Sci Adv. 2024 Dec 20;10(51):eadr8380. doi: 10.1126/sciadv.adr8380. Epub 2024 Dec 20. Sci Adv. 2024. PMID: 39705344 Free PMC article.

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