Furey TS - Search Results

1

A general integrative genomic feature transcription factor binding site prediction method applied to analysis of USF1 binding in cardiovascular disease.

Wang T, Furey TS, Connelly JJ, Ji S, Nelson S, Heber S, Gregory SG, Hauser ER. Wang T, et al. Among authors: furey ts. Hum Genomics. 2009 Apr;3(3):221-35. doi: 10.1186/1479-7364-3-3-221. Hum Genomics. 2009. PMID: 19403457 Free PMC article.

2

Intestinal epithelial cell barrier dysfunction and elevated Angiopoietin-like 4 identified in orally susceptible peanut allergy model.

Steinbach EC, Smeekens JM, Roy S, Toyonaga T, Cornaby C, Perini LB, Berglind AE, Kulis MD, Kim EH, Ferris MT, Furey TS, Burks AW, Sheikh SZ. Steinbach EC, et al. Among authors: furey ts. Clin Exp Allergy. 2023 Feb;53(2):210-215. doi: 10.1111/cea.14248. Epub 2022 Nov 6. Clin Exp Allergy. 2023. PMID: 36336910 Free PMC article. No abstract available.

3

Comparison of human (and other) genome browsers.

Furey TS. Furey TS. Hum Genomics. 2006 Jan;2(4):266-70. doi: 10.1186/1479-7364-2-4-266. Hum Genomics. 2006. PMID: 16460652 Free PMC article. Review.

4

High-resolution mapping and characterization of open chromatin across the genome.

Boyle AP, Davis S, Shulha HP, Meltzer P, Margulies EH, Weng Z, Furey TS, Crawford GE. Boyle AP, et al. Among authors: furey ts. Cell. 2008 Jan 25;132(2):311-22. doi: 10.1016/j.cell.2007.12.014. Cell. 2008. PMID: 18243105 Free PMC article.

5

F-Seq: a feature density estimator for high-throughput sequence tags.

Boyle AP, Guinney J, Crawford GE, Furey TS. Boyle AP, et al. Among authors: furey ts. Bioinformatics. 2008 Nov 1;24(21):2537-8. doi: 10.1093/bioinformatics/btn480. Epub 2008 Sep 10. Bioinformatics. 2008. PMID: 18784119 Free PMC article.

6

Analysis of complex disease association and linkage studies using the University of California Santa Cruz Genome Browser.

Wang T, Furey TS. Wang T, et al. Among authors: furey ts. Circ Cardiovasc Genet. 2009 Apr;2(2):199-204. doi: 10.1161/CIRCGENETICS.108.843946. Circ Cardiovasc Genet. 2009. PMID: 20031585 Free PMC article. Review. No abstract available.

7

High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells.

Boyle AP, Song L, Lee BK, London D, Keefe D, Birney E, Iyer VR, Crawford GE, Furey TS. Boyle AP, et al. Among authors: furey ts. Genome Res. 2011 Mar;21(3):456-64. doi: 10.1101/gr.112656.110. Epub 2010 Nov 24. Genome Res. 2011. PMID: 21106903 Free PMC article.

8

Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity.

Song L, Zhang Z, Grasfeder LL, Boyle AP, Giresi PG, Lee BK, Sheffield NC, Gräf S, Huss M, Keefe D, Liu Z, London D, McDaniell RM, Shibata Y, Showers KA, Simon JM, Vales T, Wang T, Winter D, Zhang Z, Clarke ND, Birney E, Iyer VR, Crawford GE, Lieb JD, Furey TS. Song L, et al. Among authors: furey ts. Genome Res. 2011 Oct;21(10):1757-67. doi: 10.1101/gr.121541.111. Epub 2011 Jul 12. Genome Res. 2011. PMID: 21750106 Free PMC article.

9

Integrating genetic and gene expression evidence into genome-wide association analysis of gene sets.

Xiong Q, Ancona N, Hauser ER, Mukherjee S, Furey TS. Xiong Q, et al. Among authors: furey ts. Genome Res. 2012 Feb;22(2):386-97. doi: 10.1101/gr.124370.111. Epub 2011 Sep 22. Genome Res. 2012. PMID: 21940837 Free PMC article.

10

Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions.

Sheffield NC, Thurman RE, Song L, Safi A, Stamatoyannopoulos JA, Lenhard B, Crawford GE, Furey TS. Sheffield NC, et al. Among authors: furey ts. Genome Res. 2013 May;23(5):777-88. doi: 10.1101/gr.152140.112. Epub 2013 Mar 12. Genome Res. 2013. PMID: 23482648 Free PMC article.

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