Im W - Search Results

1

CHARMM: the biomolecular simulation program.

Brooks BR, Brooks CL 3rd, Mackerell AD Jr, Nilsson L, Petrella RJ, Roux B, Won Y, Archontis G, Bartels C, Boresch S, Caflisch A, Caves L, Cui Q, Dinner AR, Feig M, Fischer S, Gao J, Hodoscek M, Im W, Kuczera K, Lazaridis T, Ma J, Ovchinnikov V, Paci E, Pastor RW, Post CB, Pu JZ, Schaefer M, Tidor B, Venable RM, Woodcock HL, Wu X, Yang W, York DM, Karplus M. Brooks BR, et al. Among authors: im w. J Comput Chem. 2009 Jul 30;30(10):1545-614. doi: 10.1002/jcc.21287. J Comput Chem. 2009. PMID: 19444816 Free PMC article. Review.

2

A Grand Canonical Monte Carlo-Brownian dynamics algorithm for simulating ion channels.

Im W, Seefeld S, Roux B. Im W, et al. Biophys J. 2000 Aug;79(2):788-801. doi: 10.1016/S0006-3495(00)76336-3. Biophys J. 2000. PMID: 10920012 Free PMC article.

3

Ions and counterions in a biological channel: a molecular dynamics simulation of OmpF porin from Escherichia coli in an explicit membrane with 1 M KCl aqueous salt solution.

Im W, Roux B. Im W, et al. J Mol Biol. 2002 Jun 21;319(5):1177-97. doi: 10.1016/S0022-2836(02)00380-7. J Mol Biol. 2002. PMID: 12079356

4

Ion permeation and selectivity of OmpF porin: a theoretical study based on molecular dynamics, Brownian dynamics, and continuum electrodiffusion theory.

Im W, Roux B. Im W, et al. J Mol Biol. 2002 Sep 27;322(4):851-69. doi: 10.1016/s0022-2836(02)00778-7. J Mol Biol. 2002. PMID: 12270719

5

Generalized born model with a simple smoothing function.

Im W, Lee MS, Brooks CL 3rd. Im W, et al. J Comput Chem. 2003 Nov 15;24(14):1691-702. doi: 10.1002/jcc.10321. J Comput Chem. 2003. PMID: 12964188

The present GB model is formulated in this manner to provide consistency with the Poisson-Boltzmann (PB) theory previously developed to yield numerically stable electrostatic solvation forces based on finite-difference methods (W. Im, D. Beglov, and B. Roux, Comp Ph …

The present GB model is formulated in this manner to provide consistency with the Poisson-Boltzmann (PB) theory previously developed to yiel …

6

An implicit membrane generalized born theory for the study of structure, stability, and interactions of membrane proteins.

Im W, Feig M, Brooks CL 3rd. Im W, et al. Biophys J. 2003 Nov;85(5):2900-18. doi: 10.1016/S0006-3495(03)74712-2. Biophys J. 2003. PMID: 14581194 Free PMC article.

7

Performance comparison of generalized born and Poisson methods in the calculation of electrostatic solvation energies for protein structures.

Feig M, Onufriev A, Lee MS, Im W, Case DA, Brooks CL 3rd. Feig M, et al. Among authors: im w. J Comput Chem. 2004 Jan 30;25(2):265-84. doi: 10.1002/jcc.10378. J Comput Chem. 2004. PMID: 14648625

8

De novo folding of membrane proteins: an exploration of the structure and NMR properties of the fd coat protein.

Im W, Brooks CL 3rd. Im W, et al. J Mol Biol. 2004 Mar 26;337(3):513-9. doi: 10.1016/j.jmb.2004.01.045. J Mol Biol. 2004. PMID: 15019773

9

Implicit solvation based on generalized Born theory in different dielectric environments.

Feig M, Im W, Brooks CL 3rd. Feig M, et al. Among authors: im w. J Chem Phys. 2004 Jan 8;120(2):903-11. doi: 10.1063/1.1631258. J Chem Phys. 2004. PMID: 15267926

10

Ion permeation through the alpha-hemolysin channel: theoretical studies based on Brownian dynamics and Poisson-Nernst-Plank electrodiffusion theory.

Noskov SY, Im W, Roux B. Noskov SY, et al. Among authors: im w. Biophys J. 2004 Oct;87(4):2299-309. doi: 10.1529/biophysj.104.044008. Biophys J. 2004. PMID: 15454431 Free PMC article.

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