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CHARMM: the biomolecular simulation program.
Brooks BR, Brooks CL 3rd, Mackerell AD Jr, Nilsson L, Petrella RJ, Roux B, Won Y, Archontis G, Bartels C, Boresch S, Caflisch A, Caves L, Cui Q, Dinner AR, Feig M, Fischer S, Gao J, Hodoscek M, Im W, Kuczera K, Lazaridis T, Ma J, Ovchinnikov V, Paci E, Pastor RW, Post CB, Pu JZ, Schaefer M, Tidor B, Venable RM, Woodcock HL, Wu X, Yang W, York DM, Karplus M. Brooks BR, et al. Among authors: roux b. J Comput Chem. 2009 Jul 30;30(10):1545-614. doi: 10.1002/jcc.21287. J Comput Chem. 2009. PMID: 19444816 Free PMC article. Review.
Molecular dynamics simulations of the gramicidin channel.
Roux B, Karplus M. Roux B, et al. Annu Rev Biophys Biomol Struct. 1994;23:731-61. doi: 10.1146/annurev.bb.23.060194.003503. Annu Rev Biophys Biomol Struct. 1994. PMID: 7522667 Review. No abstract available.
Grand canonical Monte Carlo simulations of water in protein environments.
Woo HJ, Dinner AR, Roux B. Woo HJ, et al. Among authors: roux b. J Chem Phys. 2004 Oct 1;121(13):6392-400. doi: 10.1063/1.1784436. J Chem Phys. 2004. PMID: 15446937
In addition, finite spherical systems of pure water and containing a dialanine peptide, are simulated with GCMC while the influence of the surrounding infinite bulk is incorporated using the generalized solvent boundary potential [W. Im, S. Berneche, and B. Roux, J. …
In addition, finite spherical systems of pure water and containing a dialanine peptide, are simulated with GCMC while the influence of the s …
672 results