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Co-evolution of genomes and plasmids within Chlamydia trachomatis and the emergence in Sweden of a new variant strain.
Seth-Smith HM, Harris SR, Persson K, Marsh P, Barron A, Bignell A, Bjartling C, Clark L, Cutcliffe LT, Lambden PR, Lennard N, Lockey SJ, Quail MA, Salim O, Skilton RJ, Wang Y, Holland MJ, Parkhill J, Thomson NR, Clarke IN. Seth-Smith HM, et al. Among authors: cutcliffe lt. BMC Genomics. 2009 May 21;10:239. doi: 10.1186/1471-2164-10-239. BMC Genomics. 2009. PMID: 19460133 Free PMC article.
The Swedish new variant of Chlamydia trachomatis: genome sequence, morphology, cell tropism and phenotypic characterization.
Unemo M, Seth-Smith HMB, Cutcliffe LT, Skilton RJ, Barlow D, Goulding D, Persson K, Harris SR, Kelly A, Bjartling C, Fredlund H, Olcén P, Thomson NR, Clarke IN. Unemo M, et al. Among authors: cutcliffe lt. Microbiology (Reading). 2010 May;156(Pt 5):1394-1404. doi: 10.1099/mic.0.036830-0. Epub 2010 Jan 21. Microbiology (Reading). 2010. PMID: 20093289 Free PMC article.
Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing.
Harris SR, Clarke IN, Seth-Smith HM, Solomon AW, Cutcliffe LT, Marsh P, Skilton RJ, Holland MJ, Mabey D, Peeling RW, Lewis DA, Spratt BG, Unemo M, Persson K, Bjartling C, Brunham R, de Vries HJ, Morré SA, Speksnijder A, Bébéar CM, Clerc M, de Barbeyrac B, Parkhill J, Thomson NR. Harris SR, et al. Among authors: cutcliffe lt. Nat Genet. 2012 Mar 11;44(4):413-9, S1. doi: 10.1038/ng.2214. Nat Genet. 2012. PMID: 22406642 Free PMC article.
Genotyping markers used for multi locus VNTR analysis with ompA (MLVA-ompA) and multi sequence typing (MST) retain stability in Chlamydia trachomatis.
Labiran C, Clarke IN, Cutcliffe LT, Wang Y, Skilton RJ, Persson K, Bjartling C, Herrmann B, Christerson L, Marsh P. Labiran C, et al. Among authors: cutcliffe lt. Front Cell Infect Microbiol. 2012 May 17;2:68. doi: 10.3389/fcimb.2012.00068. eCollection 2012. Front Cell Infect Microbiol. 2012. PMID: 22919659 Free PMC article.
Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture.
Seth-Smith HM, Harris SR, Skilton RJ, Radebe FM, Golparian D, Shipitsyna E, Duy PT, Scott P, Cutcliffe LT, O'Neill C, Parmar S, Pitt R, Baker S, Ison CA, Marsh P, Jalal H, Lewis DA, Unemo M, Clarke IN, Parkhill J, Thomson NR. Seth-Smith HM, et al. Among authors: cutcliffe lt. Genome Res. 2013 May;23(5):855-66. doi: 10.1101/gr.150037.112. Epub 2013 Mar 22. Genome Res. 2013. PMID: 23525359 Free PMC article.
Chlamydia trachomatis clinical isolates identified as tetracycline resistant do not exhibit resistance in vitro: whole-genome sequencing reveals a mutation in porB but no evidence for tetracycline resistance genes.
O'Neill CE, Seth-Smith HMB, Van Der Pol B, Harris SR, Thomson NR, Cutcliffe LT, Clarke IN. O'Neill CE, et al. Among authors: cutcliffe lt. Microbiology (Reading). 2013 Apr;159(Pt 4):748-756. doi: 10.1099/mic.0.065391-0. Epub 2013 Feb 1. Microbiology (Reading). 2013. PMID: 23378575 Free article.
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