Bonde B - Search Results

1

The genetic requirements for fast and slow growth in mycobacteria.

Beste DJ, Espasa M, Bonde B, Kierzek AM, Stewart GR, McFadden J. Beste DJ, et al. Among authors: bonde b. PLoS One. 2009 Apr 28;4(4):e5349. doi: 10.1371/journal.pone.0005349. PLoS One. 2009. PMID: 19479006 Free PMC article.

2

Differential producibility analysis (DPA) of transcriptomic data with metabolic networks: deconstructing the metabolic response of M. tuberculosis.

Bonde BK, Beste DJ, Laing E, Kierzek AM, McFadden J. Bonde BK, et al. PLoS Comput Biol. 2011 Jun;7(6):e1002060. doi: 10.1371/journal.pcbi.1002060. Epub 2011 Jun 30. PLoS Comput Biol. 2011. PMID: 21738454 Free PMC article.

3

GSMN-TB: a web-based genome-scale network model of Mycobacterium tuberculosis metabolism.

Beste DJ, Hooper T, Stewart G, Bonde B, Avignone-Rossa C, Bushell ME, Wheeler P, Klamt S, Kierzek AM, McFadden J. Beste DJ, et al. Among authors: bonde b. Genome Biol. 2007;8(5):R89. doi: 10.1186/gb-2007-8-5-r89. Genome Biol. 2007. PMID: 17521419 Free PMC article.

4

¹³C metabolic flux analysis identifies an unusual route for pyruvate dissimilation in mycobacteria which requires isocitrate lyase and carbon dioxide fixation.

Beste DJ, Bonde B, Hawkins N, Ward JL, Beale MH, Noack S, Nöh K, Kruger NJ, Ratcliffe RG, McFadden J. Beste DJ, et al. Among authors: bonde b. PLoS Pathog. 2011 Jul;7(7):e1002091. doi: 10.1371/journal.ppat.1002091. Epub 2011 Jul 21. PLoS Pathog. 2011. PMID: 21814509 Free PMC article.

5

Transcriptomic analysis identifies growth rate modulation as a component of the adaptation of mycobacteria to survival inside the macrophage.

Beste DJ, Laing E, Bonde B, Avignone-Rossa C, Bushell ME, McFadden JJ. Beste DJ, et al. Among authors: bonde b. J Bacteriol. 2007 Jun;189(11):3969-76. doi: 10.1128/JB.01787-06. Epub 2007 Mar 23. J Bacteriol. 2007. PMID: 17384194 Free PMC article.

6

Selection of objective function in genome scale flux balance analysis for process feed development in antibiotic production.

Khannapho C, Zhao H, Bonde BK, Kierzek AM, Avignone-Rossa CA, Bushell ME. Khannapho C, et al. Metab Eng. 2008 Sep;10(5):227-33. doi: 10.1016/j.ymben.2008.06.003. Epub 2008 Jun 17. Metab Eng. 2008. PMID: 18611443

7

GSMN-ML- a genome scale metabolic network reconstruction of the obligate human pathogen Mycobacterium leprae.

Borah K, Kearney JL, Banerjee R, Vats P, Wu H, Dahale S, Manjari Kasibhatla S, Joshi R, Bonde B, Ojo O, Lahiri R, Williams DL, McFadden J. Borah K, et al. Among authors: bonde b. PLoS Negl Trop Dis. 2020 Jul 6;14(7):e0007871. doi: 10.1371/journal.pntd.0007871. eCollection 2020 Jul. PLoS Negl Trop Dis. 2020. PMID: 32628669 Free PMC article.

8

Challenges to be faced in the reconstruction of metabolic networks from public databases.

Poolman MG, Bonde BK, Gevorgyan A, Patel HH, Fell DA. Poolman MG, et al. Among authors: bonde bk. Syst Biol (Stevenage). 2006 Sep;153(5):379-84. doi: 10.1049/ip-syb:20060012. Syst Biol (Stevenage). 2006. PMID: 16986322

9

Ecological implications of the pink salmon invasion in northern Norway-Aggregative responses and terrestrial transfer by white-tailed eagles.

Bonde BM, Stien A. Bonde BM, et al. Ecol Evol. 2024 Jul 21;14(7):e70001. doi: 10.1002/ece3.70001. eCollection 2024 Jul. Ecol Evol. 2024. PMID: 39041009 Free PMC article.

10

Edge, Fog, and Cloud Against Disease: The Potential of High-Performance Cloud Computing for Pharma Drug Discovery.

Bonde B. Bonde B. Methods Mol Biol. 2024;2716:181-202. doi: 10.1007/978-1-0716-3449-3_8. Methods Mol Biol. 2024. PMID: 37702940 Review.

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