He J - Search Results

1

An effective convergence independent loop closure method using Forward-Backward Cyclic Coordinate Descent.

Al-Nasr K, He J. Al-Nasr K, et al. Among authors: he j. Int J Data Min Bioinform. 2009;3(3):346-61. doi: 10.1504/ijdmb.2009.026712. Int J Data Min Bioinform. 2009. PMID: 19623775

2

Structure prediction for the helical skeletons detected from the low resolution protein density map.

Al Nasr K, Sun W, He J. Al Nasr K, et al. Among authors: he j. BMC Bioinformatics. 2010 Jan 18;11 Suppl 1(Suppl 1):S44. doi: 10.1186/1471-2105-11-S1-S44. BMC Bioinformatics. 2010. PMID: 20122218 Free PMC article.

3

Ranking valid topologies of the secondary structure elements using a constraint graph.

Al Nasr K, Ranjan D, Zubair M, He J. Al Nasr K, et al. Among authors: he j. J Bioinform Comput Biol. 2011 Jun;9(3):415-30. doi: 10.1142/s0219720011005604. J Bioinform Comput Biol. 2011. PMID: 21714133

4

Improved efficiency in cryo-EM secondary structure topology determination from inaccurate data.

Biswas A, Si D, Al Nasr K, Ranjan D, Zubair M, He J. Biswas A, et al. Among authors: he j. J Bioinform Comput Biol. 2012 Jun;10(3):1242006. doi: 10.1142/S0219720012420061. J Bioinform Comput Biol. 2012. PMID: 22809382

5

Estimating loop length from CryoEM images at medium resolutions.

McKnight A, Si D, Al Nasr K, Chernikov A, Chrisochoides N, He J. McKnight A, et al. Among authors: he j. BMC Struct Biol. 2013;13 Suppl 1(Suppl 1):S5. doi: 10.1186/1472-6807-13-S1-S5. Epub 2013 Nov 8. BMC Struct Biol. 2013. PMID: 24565041 Free PMC article.

6

Solving the Secondary Structure Matching Problem in Cryo-EM De Novo Modeling Using a Constrained K-Shortest Path Graph Algorithm.

Al Nasr K, Ranjan D, Zubair M, Chen L, He J. Al Nasr K, et al. Among authors: he j. IEEE/ACM Trans Comput Biol Bioinform. 2014 Mar-Apr;11(2):419-30. doi: 10.1109/TCBB.2014.2302803. IEEE/ACM Trans Comput Biol Bioinform. 2014. PMID: 26355788

7

Special Issue Preface: The 9th Computational Structural Bioinformatics Workshop.

He J, Al Nasr K, Sun W, Lu Y. He J, et al. J Comput Biol. 2018 Jan;25(1):1-2. doi: 10.1089/cmb.2018.29010.jh. J Comput Biol. 2018. PMID: 29313734 No abstract available.

8

Intensity-based skeletonization of CryoEM gray-scale images using a true segmentation-free algorithm.

Al Nasr K, Liu C, Rwebangira M, Burge L, He J. Al Nasr K, et al. Among authors: he j. IEEE/ACM Trans Comput Biol Bioinform. 2013 Sep-Oct;10(5):1289-98. doi: 10.1109/TCBB.2013.121. IEEE/ACM Trans Comput Biol Bioinform. 2013. PMID: 24384713 Free PMC article.

9

Deriving topology and sequence alignment for the helix skeleton in low-resolution protein density maps.

Lu Y, He J, Strauss CE. Lu Y, et al. Among authors: he j. J Bioinform Comput Biol. 2008 Feb;6(1):183-201. doi: 10.1142/s0219720008003357. J Bioinform Comput Biol. 2008. PMID: 18324752

10

Reduction of the secondary structure topological space through direct estimation of the contact energy formed by the secondary structures.

Sun W, He J. Sun W, et al. Among authors: he j. BMC Bioinformatics. 2009 Jan 30;10 Suppl 1(Suppl 1):S40. doi: 10.1186/1471-2105-10-S1-S40. BMC Bioinformatics. 2009. PMID: 19208142 Free PMC article.

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