Yip KY - Search Results

1

Multi-level learning: improving the prediction of protein, domain and residue interactions by allowing information flow between levels.

Yip KY, Kim PM, McDermott D, Gerstein M. Yip KY, et al. BMC Bioinformatics. 2009 Aug 5;10:241. doi: 10.1186/1471-2105-10-241. BMC Bioinformatics. 2009. PMID: 19656385 Free PMC article.

2

A web services choreography scenario for interoperating bioinformatics applications.

de Knikker R, Guo Y, Li JL, Kwan AK, Yip KY, Cheung DW, Cheung KH. de Knikker R, et al. Among authors: yip ky. BMC Bioinformatics. 2004 Mar 10;5:25. doi: 10.1186/1471-2105-5-25. BMC Bioinformatics. 2004. PMID: 15113410 Free PMC article.

3

YeastHub: a semantic web use case for integrating data in the life sciences domain.

Cheung KH, Yip KY, Smith A, Deknikker R, Masiar A, Gerstein M. Cheung KH, et al. Among authors: yip ky. Bioinformatics. 2005 Jun;21 Suppl 1:i85-96. doi: 10.1093/bioinformatics/bti1026. Bioinformatics. 2005. PMID: 15961502

4

The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks.

Yip KY, Yu H, Kim PM, Schultz M, Gerstein M. Yip KY, et al. Bioinformatics. 2006 Dec 1;22(23):2968-70. doi: 10.1093/bioinformatics/btl488. Epub 2006 Oct 4. Bioinformatics. 2006. PMID: 17021160

5

LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics.

Smith AK, Cheung KH, Yip KY, Schultz M, Gerstein MK. Smith AK, et al. Among authors: yip ky. BMC Bioinformatics. 2007 May 9;8 Suppl 3(Suppl 3):S5. doi: 10.1186/1471-2105-8-S3-S5. BMC Bioinformatics. 2007. PMID: 17493288 Free PMC article. Review.

6

Comparing classical pathways and modern networks: towards the development of an edge ontology.

Lu LJ, Sboner A, Huang YJ, Lu HX, Gianoulis TA, Yip KY, Kim PM, Montelione GT, Gerstein MB. Lu LJ, et al. Among authors: yip ky. Trends Biochem Sci. 2007 Jul;32(7):320-31. doi: 10.1016/j.tibs.2007.06.003. Epub 2007 Jun 20. Trends Biochem Sci. 2007. PMID: 17583513

7

An integrated system for studying residue coevolution in proteins.

Yip KY, Patel P, Kim PM, Engelman DM, McDermott D, Gerstein M. Yip KY, et al. Bioinformatics. 2008 Jan 15;24(2):290-2. doi: 10.1093/bioinformatics/btm584. Epub 2007 Dec 1. Bioinformatics. 2008. PMID: 18056067

8

Training set expansion: an approach to improving the reconstruction of biological networks from limited and uneven reliable interactions.

Yip KY, Gerstein M. Yip KY, et al. Bioinformatics. 2009 Jan 15;25(2):243-50. doi: 10.1093/bioinformatics/btn602. Epub 2008 Nov 17. Bioinformatics. 2009. PMID: 19015141 Free PMC article.

9

Improved reconstruction of in silico gene regulatory networks by integrating knockout and perturbation data.

Yip KY, Alexander RP, Yan KK, Gerstein M. Yip KY, et al. PLoS One. 2010 Jan 26;5(1):e8121. doi: 10.1371/journal.pone.0008121. PLoS One. 2010. PMID: 20126643 Free PMC article.

10

Analysis of membrane proteins in metagenomics: networks of correlated environmental features and protein families.

Patel PV, Gianoulis TA, Bjornson RD, Yip KY, Engelman DM, Gerstein MB. Patel PV, et al. Among authors: yip ky. Genome Res. 2010 Jul;20(7):960-71. doi: 10.1101/gr.102814.109. Epub 2010 Apr 29. Genome Res. 2010. PMID: 20430783 Free PMC article.

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