Davis IW - Search Results

1

KING (Kinemage, Next Generation): a versatile interactive molecular and scientific visualization program.

Chen VB, Davis IW, Richardson DC. Chen VB, et al. Among authors: davis iw. Protein Sci. 2009 Nov;18(11):2403-9. doi: 10.1002/pro.250. Protein Sci. 2009. PMID: 19768809 Free PMC article.

2

MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes.

Davis IW, Murray LW, Richardson JS, Richardson DC. Davis IW, et al. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W615-9. doi: 10.1093/nar/gkh398. Nucleic Acids Res. 2004. PMID: 15215462 Free PMC article.

3

MolProbity: all-atom contacts and structure validation for proteins and nucleic acids.

Davis IW, Leaver-Fay A, Chen VB, Block JN, Kapral GJ, Wang X, Murray LW, Arendall WB 3rd, Snoeyink J, Richardson JS, Richardson DC. Davis IW, et al. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W375-83. doi: 10.1093/nar/gkm216. Epub 2007 Apr 22. Nucleic Acids Res. 2007. PMID: 17452350 Free PMC article.

4

Structure validation by Calpha geometry: phi,psi and Cbeta deviation.

Lovell SC, Davis IW, Arendall WB 3rd, de Bakker PI, Word JM, Prisant MG, Richardson JS, Richardson DC. Lovell SC, et al. Among authors: davis iw. Proteins. 2003 Feb 15;50(3):437-50. doi: 10.1002/prot.10286. Proteins. 2003. PMID: 12557186

5

A test of enhancing model accuracy in high-throughput crystallography.

Arendall WB 3rd, Tempel W, Richardson JS, Zhou W, Wang S, Davis IW, Liu ZJ, Rose JP, Carson WM, Luo M, Richardson DC, Wang BC. Arendall WB 3rd, et al. Among authors: davis iw. J Struct Funct Genomics. 2005;6(1):1-11. doi: 10.1007/s10969-005-3138-4. J Struct Funct Genomics. 2005. PMID: 15965733

6

The backrub motion: how protein backbone shrugs when a sidechain dances.

Davis IW, Arendall WB 3rd, Richardson DC, Richardson JS. Davis IW, et al. Structure. 2006 Feb;14(2):265-74. doi: 10.1016/j.str.2005.10.007. Structure. 2006. PMID: 16472746 Free article.

7

KinImmerse: Macromolecular VR for NMR ensembles.

Block JN, Zielinski DJ, Chen VB, Davis IW, Vinson EC, Brady R, Richardson JS, Richardson DC. Block JN, et al. Among authors: davis iw. Source Code Biol Med. 2009 Feb 17;4:3. doi: 10.1186/1751-0473-4-3. Source Code Biol Med. 2009. PMID: 19222844 Free PMC article.

8

PHENIX: a comprehensive Python-based system for macromolecular structure solution.

Adams PD, Afonine PV, Bunkóczi G, Chen VB, Davis IW, Echols N, Headd JJ, Hung LW, Kapral GJ, Grosse-Kunstleve RW, McCoy AJ, Moriarty NW, Oeffner R, Read RJ, Richardson DC, Richardson JS, Terwilliger TC, Zwart PH. Adams PD, et al. Among authors: davis iw. Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):213-21. doi: 10.1107/S0907444909052925. Epub 2010 Jan 22. Acta Crystallogr D Biol Crystallogr. 2010. PMID: 20124702 Free PMC article.

9

Blind docking of pharmaceutically relevant compounds using RosettaLigand.

Davis IW, Raha K, Head MS, Baker D. Davis IW, et al. Protein Sci. 2009 Sep;18(9):1998-2002. doi: 10.1002/pro.192. Protein Sci. 2009. PMID: 19554568 Free PMC article.

10

RosettaLigand docking with full ligand and receptor flexibility.

Davis IW, Baker D. Davis IW, et al. J Mol Biol. 2009 Jan 16;385(2):381-92. doi: 10.1016/j.jmb.2008.11.010. Epub 2008 Nov 18. J Mol Biol. 2009. PMID: 19041878

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