Törönen P - Search Results

1

Robust extraction of functional signals from gene set analysis using a generalized threshold free scoring function.

Törönen P, Ojala PJ, Marttinen P, Holm L. Törönen P, et al. BMC Bioinformatics. 2009 Sep 23;10:307. doi: 10.1186/1471-2105-10-307. BMC Bioinformatics. 2009. PMID: 19775443 Free PMC article.

2

Trustworthiness and metrics in visualizing similarity of gene expression.

Kaski S, Nikkilä J, Oja M, Venna J, Törönen P, Castrén E. Kaski S, et al. Among authors: toronen p. BMC Bioinformatics. 2003 Oct 13;4:48. doi: 10.1186/1471-2105-4-48. BMC Bioinformatics. 2003. PMID: 14552657 Free PMC article.

3

Selection of informative clusters from hierarchical cluster tree with gene classes.

Toronen P. Toronen P. BMC Bioinformatics. 2004 Mar 25;5:32. doi: 10.1186/1471-2105-5-32. BMC Bioinformatics. 2004. PMID: 15043761 Free PMC article.

4

Theme discovery from gene lists for identification and viewing of multiple functional groups.

Pehkonen P, Wong G, Törönen P. Pehkonen P, et al. Among authors: toronen p. BMC Bioinformatics. 2005 Jun 29;6:162. doi: 10.1186/1471-2105-6-162. BMC Bioinformatics. 2005. PMID: 15987504 Free PMC article.

5

POXO: a web-enabled tool series to discover transcription factor binding sites.

Kankainen M, Pehkonen P, Rosenstöm P, Törönen P, Wong G, Holm L. Kankainen M, et al. Among authors: toronen p. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W534-40. doi: 10.1093/nar/gkl296. Nucleic Acids Res. 2006. PMID: 16845065 Free PMC article.

6

Bayesian search of functionally divergent protein subgroups and their function specific residues.

Marttinen P, Corander J, Törönen P, Holm L. Marttinen P, et al. Among authors: toronen p. Bioinformatics. 2006 Oct 15;22(20):2466-74. doi: 10.1093/bioinformatics/btl411. Epub 2006 Jul 26. Bioinformatics. 2006. PMID: 16870932

7

Identifying functional gene sets from hierarchically clustered expression data: map of abiotic stress regulated genes in Arabidopsis thaliana.

Kankainen M, Brader G, Törönen P, Palva ET, Holm L. Kankainen M, et al. Among authors: toronen p. Nucleic Acids Res. 2006;34(18):e124. doi: 10.1093/nar/gkl694. Epub 2006 Sep 26. Nucleic Acids Res. 2006. PMID: 17003050 Free PMC article.

8

Interspliced transcription chimeras: neglected pathological mechanism infiltrating gene accession queries?

Tolvanen M, Ojala PJ, Törönen P, Anderson H, Partanen J, Turpeinen H. Tolvanen M, et al. Among authors: toronen p. J Biomed Inform. 2009 Apr;42(2):382-9. doi: 10.1016/j.jbi.2008.11.002. Epub 2008 Nov 13. J Biomed Inform. 2009. PMID: 19041732 Free article.

9

Generation of Gene Ontology benchmark datasets with various types of positive signal.

Törönen P, Pehkonen P, Holm L. Törönen P, et al. BMC Bioinformatics. 2009 Oct 7;10:319. doi: 10.1186/1471-2105-10-319. BMC Bioinformatics. 2009. PMID: 19811632 Free PMC article.

10

Revised phylogeny and novel horizontally acquired virulence determinants of the model soft rot phytopathogen Pectobacterium wasabiae SCC3193.

Nykyri J, Niemi O, Koskinen P, Nokso-Koivisto J, Pasanen M, Broberg M, Plyusnin I, Törönen P, Holm L, Pirhonen M, Palva ET. Nykyri J, et al. Among authors: toronen p. PLoS Pathog. 2012;8(11):e1003013. doi: 10.1371/journal.ppat.1003013. Epub 2012 Nov 1. PLoS Pathog. 2012. PMID: 23133391 Free PMC article.

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