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Analysis of cell fate from single-cell gene expression profiles in C. elegans.
Cell. 2009 Oct 30;139(3):623-33. doi: 10.1016/j.cell.2009.08.044.
Cell. 2009.
PMID: 19879847
Free PMC article.
Automated cellular annotation for high-resolution images of adult Caenorhabditis elegans.
Aerni SJ, Liu X, Do CB, Gross SS, Nguyen A, Guo SD, Long F, Peng H, Kim SS, Batzoglou S.
Aerni SJ, et al.
Bioinformatics. 2013 Jul 1;29(13):i18-26. doi: 10.1093/bioinformatics/btt223.
Bioinformatics. 2013.
PMID: 23812982
Free PMC article.
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Reconstruction of genealogical relationships with applications to Phase III of HapMap.
Kyriazopoulou-Panagiotopoulou S, Kashef Haghighi D, Aerni SJ, Sundquist A, Bercovici S, Batzoglou S.
Kyriazopoulou-Panagiotopoulou S, et al. Among authors: aerni sj.
Bioinformatics. 2011 Jul 1;27(13):i333-41. doi: 10.1093/bioinformatics/btr243.
Bioinformatics. 2011.
PMID: 21685089
Free PMC article.
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Reconstructing cancer genomes from paired-end sequencing data.
Oesper L, Ritz A, Aerni SJ, Drebin R, Raphael BJ.
Oesper L, et al. Among authors: aerni sj.
BMC Bioinformatics. 2012 Apr 19;13 Suppl 6(Suppl 6):S10. doi: 10.1186/1471-2105-13-S6-S10.
BMC Bioinformatics. 2012.
PMID: 22537039
Free PMC article.
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A sequence-based survey of the complex structural organization of tumor genomes.
Raphael BJ, Volik S, Yu P, Wu C, Huang G, Linardopoulou EV, Trask BJ, Waldman F, Costello J, Pienta KJ, Mills GB, Bajsarowicz K, Kobayashi Y, Sridharan S, Paris PL, Tao Q, Aerni SJ, Brown RP, Bashir A, Gray JW, Cheng JF, de Jong P, Nefedov M, Ried T, Padilla-Nash HM, Collins CC.
Raphael BJ, et al. Among authors: aerni sj.
Genome Biol. 2008;9(3):R59. doi: 10.1186/gb-2008-9-3-r59. Epub 2008 Mar 25.
Genome Biol. 2008.
PMID: 18364049
Free PMC article.
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Computational identification of CDR3 sequence archetypes among immunoglobulin sequences in chronic lymphocytic leukemia.
Messmer BT, Raphael BJ, Aerni SJ, Widhopf GF, Rassenti LZ, Gribben JG, Kay NE, Kipps TJ.
Messmer BT, et al. Among authors: aerni sj.
Leuk Res. 2009 Mar;33(3):368-76. doi: 10.1016/j.leukres.2008.05.022. Epub 2008 Jul 21.
Leuk Res. 2009.
PMID: 18640719
Free PMC article.
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