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ELM: the status of the 2010 eukaryotic linear motif resource.
Gould CM, Diella F, Via A, Puntervoll P, Gemünd C, Chabanis-Davidson S, Michael S, Sayadi A, Bryne JC, Chica C, Seiler M, Davey NE, Haslam N, Weatheritt RJ, Budd A, Hughes T, Pas J, Rychlewski L, Travé G, Aasland R, Helmer-Citterich M, Linding R, Gibson TJ. Gould CM, et al. Among authors: via a. Nucleic Acids Res. 2010 Jan;38(Database issue):D167-80. doi: 10.1093/nar/gkp1016. Epub 2009 Nov 17. Nucleic Acids Res. 2010. PMID: 19920119 Free PMC article.
ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins.
Puntervoll P, Linding R, Gemünd C, Chabanis-Davidson S, Mattingsdal M, Cameron S, Martin DM, Ausiello G, Brannetti B, Costantini A, Ferrè F, Maselli V, Via A, Cesareni G, Diella F, Superti-Furga G, Wyrwicz L, Ramu C, McGuigan C, Gudavalli R, Letunic I, Bork P, Rychlewski L, Küster B, Helmer-Citterich M, Hunter WN, Aasland R, Gibson TJ. Puntervoll P, et al. Among authors: via a. Nucleic Acids Res. 2003 Jul 1;31(13):3625-30. doi: 10.1093/nar/gkg545. Nucleic Acids Res. 2003. PMID: 12824381 Free PMC article.
Phospho.ELM: a database of phosphorylation sites--update 2008.
Diella F, Gould CM, Chica C, Via A, Gibson TJ. Diella F, et al. Among authors: via a. Nucleic Acids Res. 2008 Jan;36(Database issue):D240-4. doi: 10.1093/nar/gkm772. Epub 2007 Oct 25. Nucleic Acids Res. 2008. PMID: 17962309 Free PMC article.
A structure filter for the Eukaryotic Linear Motif Resource.
Via A, Gould CM, Gemünd C, Gibson TJ, Helmer-Citterich M. Via A, et al. BMC Bioinformatics. 2009 Oct 24;10:351. doi: 10.1186/1471-2105-10-351. BMC Bioinformatics. 2009. PMID: 19852836 Free PMC article.
Putatively functional motif occurrences are mapped onto a representative domain, given that a high quality reference SCOP domain structure is available for the protein itself or a close relative. ...The structure filter is implemented as a pipeline wit …
Putatively functional motif occurrences are mapped onto a representative domain, given that a high quality reference SCOP doma …
Phospho.ELM: a database of phosphorylation sites--update 2011.
Dinkel H, Chica C, Via A, Gould CM, Jensen LJ, Gibson TJ, Diella F. Dinkel H, et al. Among authors: via a. Nucleic Acids Res. 2011 Jan;39(Database issue):D261-7. doi: 10.1093/nar/gkq1104. Epub 2010 Nov 9. Nucleic Acids Res. 2011. PMID: 21062810 Free PMC article.
ELM--the database of eukaryotic linear motifs.
Dinkel H, Michael S, Weatheritt RJ, Davey NE, Van Roey K, Altenberg B, Toedt G, Uyar B, Seiler M, Budd A, Jödicke L, Dammert MA, Schroeter C, Hammer M, Schmidt T, Jehl P, McGuigan C, Dymecka M, Chica C, Luck K, Via A, Chatr-Aryamontri A, Haslam N, Grebnev G, Edwards RJ, Steinmetz MO, Meiselbach H, Diella F, Gibson TJ. Dinkel H, et al. Among authors: via a. Nucleic Acids Res. 2012 Jan;40(Database issue):D242-51. doi: 10.1093/nar/gkr1064. Epub 2011 Nov 21. Nucleic Acids Res. 2012. PMID: 22110040 Free PMC article.
SH3-Hunter: discovery of SH3 domain interaction sites in proteins.
Ferraro E, Peluso D, Via A, Ausiello G, Helmer-Citterich M. Ferraro E, et al. Among authors: via a. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W451-4. doi: 10.1093/nar/gkm296. Epub 2007 May 7. Nucleic Acids Res. 2007. PMID: 17485474 Free PMC article.
104 results