Oliva R - Search Results

1

Frequency and effect of the binding of Mg2+, Mn2+, and Co2+ ions on the guanine base in Watson-Crick and reverse Watson-Crick base pairs.

Oliva R, Cavallo L. Oliva R, et al. J Phys Chem B. 2009 Nov 26;113(47):15670-8. doi: 10.1021/jp906847p. J Phys Chem B. 2009. PMID: 19921955

2

Accurate energies of hydrogen bonded nucleic acid base pairs and triplets in tRNA tertiary interactions.

Oliva R, Cavallo L, Tramontano A. Oliva R, et al. Nucleic Acids Res. 2006 Feb 6;34(3):865-79. doi: 10.1093/nar/gkj491. Print 2006. Nucleic Acids Res. 2006. PMID: 16461956 Free PMC article.

3

Mg2+ binding and archaeosine modification stabilize the G15 C48 Levitt base pair in tRNAs.

Oliva R, Tramontano A, Cavallo L. Oliva R, et al. RNA. 2007 Sep;13(9):1427-36. doi: 10.1261/rna.574407. Epub 2007 Jul 24. RNA. 2007. PMID: 17652139 Free PMC article.

4

COCOMAPS: a web application to analyze and visualize contacts at the interface of biomolecular complexes.

Vangone A, Spinelli R, Scarano V, Cavallo L, Oliva R. Vangone A, et al. Among authors: oliva r. Bioinformatics. 2011 Oct 15;27(20):2915-6. doi: 10.1093/bioinformatics/btr484. Epub 2011 Aug 27. Bioinformatics. 2011. PMID: 21873642

5

CONS-COCOMAPS: a novel tool to measure and visualize the conservation of inter-residue contacts in multiple docking solutions.

Vangone A, Oliva R, Cavallo L. Vangone A, et al. Among authors: oliva r. BMC Bioinformatics. 2012 Mar 28;13 Suppl 4(Suppl 4):S19. doi: 10.1186/1471-2105-13-S4-S19. BMC Bioinformatics. 2012. PMID: 22536965 Free PMC article.

6

Ranking multiple docking solutions based on the conservation of inter-residue contacts.

Oliva R, Vangone A, Cavallo L. Oliva R, et al. Proteins. 2013 Sep;81(9):1571-84. doi: 10.1002/prot.24314. Epub 2013 Jun 17. Proteins. 2013. PMID: 23609916

7

Using a consensus approach based on the conservation of inter-residue contacts to rank CAPRI models.

Vangone A, Cavallo L, Oliva R. Vangone A, et al. Among authors: oliva r. Proteins. 2013 Dec;81(12):2210-20. doi: 10.1002/prot.24423. Epub 2013 Oct 17. Proteins. 2013. PMID: 24115176

8

Higher order structural effects stabilizing the reverse Watson-Crick Guanine-Cytosine base pair in functional RNAs.

Chawla M, Abdel-Azeim S, Oliva R, Cavallo L. Chawla M, et al. Among authors: oliva r. Nucleic Acids Res. 2014 Jan;42(2):714-26. doi: 10.1093/nar/gkt800. Epub 2013 Oct 10. Nucleic Acids Res. 2014. PMID: 24121683 Free PMC article.

9

A recurrent Gly43Asp substitution in coagulation Factor X rigidifies its catalytic pocket and impairs catalytic activity and intracellular trafficking.

Menegatti M, Vangone A, Palla R, Milano G, Cavallo L, Oliva R, De Cristofaro R, Peyvandi F. Menegatti M, et al. Among authors: oliva r. Thromb Res. 2014 Mar;133(3):481-7. doi: 10.1016/j.thromres.2013.12.020. Epub 2013 Dec 21. Thromb Res. 2014. PMID: 24393662

10

Structural basis for the recognition in an idiotype-anti-idiotype antibody complex related to celiac disease.

Vangone A, Abdel-Azeim S, Caputo I, Sblattero D, Di Niro R, Cavallo L, Oliva R. Vangone A, et al. Among authors: oliva r. PLoS One. 2014 Jul 30;9(7):e102839. doi: 10.1371/journal.pone.0102839. eCollection 2014. PLoS One. 2014. PMID: 25076134 Free PMC article.

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