Woolf TB - Search Results

1

Cooperative nature of gating transitions in K(+) channels as seen from dynamic importance sampling calculations.

Denning EJ, Woolf TB. Denning EJ, et al. Among authors: woolf tb. Proteins. 2010 Apr;78(5):1105-19. doi: 10.1002/prot.22632. Proteins. 2010. PMID: 19950367 Free PMC article.

2

Correlation between changes in nuclear magnetic resonance order parameters and conformational entropy: molecular dynamics simulations of native and denatured staphylococcal nuclease.

Wrabl JO, Shortle D, Woolf TB. Wrabl JO, et al. Among authors: woolf tb. Proteins. 2000 Feb 1;38(2):123-33. doi: 10.1002/(sici)1097-0134(20000201)38:2<123::aid-prot2>3.0.co;2-h. Proteins. 2000. PMID: 10656260

3

Dipole lattice membrane model for protein calculations.

Grossfield A, Sachs J, Woolf TB. Grossfield A, et al. Among authors: woolf tb. Proteins. 2000 Nov 1;41(2):211-23. doi: 10.1002/1097-0134(20001101)41:2<211::aid-prot60>3.0.co;2-9. Proteins. 2000. PMID: 10966574

4

Tools for channels: moving towards molecular calculations of gating and permeation in ion channel biophysics.

Woolf TB, Zuckerman DM, Lu N, Jang H. Woolf TB, et al. J Mol Graph Model. 2004 May;22(5):359-68. doi: 10.1016/j.jmgm.2003.12.003. J Mol Graph Model. 2004. PMID: 15099832 Review.

5

Folding is not required for bilayer insertion: replica exchange simulations of an alpha-helical peptide with an explicit lipid bilayer.

Nymeyer H, Woolf TB, Garcia AE. Nymeyer H, et al. Among authors: woolf tb. Proteins. 2005 Jun 1;59(4):783-90. doi: 10.1002/prot.20460. Proteins. 2005. PMID: 15828005

6

Multiple pathways in conformational transitions of the alanine dipeptide: an application of dynamic importance sampling.

Jang H, Woolf TB. Jang H, et al. Among authors: woolf tb. J Comput Chem. 2006 Aug;27(11):1136-41. doi: 10.1002/jcc.20444. J Comput Chem. 2006. PMID: 16721720

7

Insights into protein structure and function from disorder-complexity space.

Weathers EA, Paulaitis ME, Woolf TB, Hoh JH. Weathers EA, et al. Among authors: woolf tb. Proteins. 2007 Jan 1;66(1):16-28. doi: 10.1002/prot.21055. Proteins. 2007. PMID: 17044059

8

How a small change in retinal leads to G-protein activation: initial events suggested by molecular dynamics calculations.

Crozier PS, Stevens MJ, Woolf TB. Crozier PS, et al. Among authors: woolf tb. Proteins. 2007 Feb 15;66(3):559-74. doi: 10.1002/prot.21175. Proteins. 2007. PMID: 17109408 Free PMC article.

9

How to lose a kink and gain a helix: pH independent conformational changes of the fusion domains from influenza hemagglutinin in heterogeneous lipid bilayers.

Jang H, Michaud-Agrawal N, Johnston JM, Woolf TB. Jang H, et al. Among authors: woolf tb. Proteins. 2008 Jul;72(1):299-312. doi: 10.1002/prot.21925. Proteins. 2008. PMID: 18214961

10

Double bilayers and transmembrane gradients: a molecular dynamics study of a highly charged peptide.

Denning EJ, Woolf TB. Denning EJ, et al. Among authors: woolf tb. Biophys J. 2008 Oct;95(7):3161-73. doi: 10.1529/biophysj.108.134049. Epub 2008 Jun 27. Biophys J. 2008. PMID: 18586841 Free PMC article.

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