Vilo J - Search Results

1

Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods.

Adler P, Kolde R, Kull M, Tkachenko A, Peterson H, Reimand J, Vilo J. Adler P, et al. Among authors: vilo j. Genome Biol. 2009;10(12):R139. doi: 10.1186/gb-2009-10-12-r139. Epub 2009 Dec 4. Genome Biol. 2009. PMID: 19961599 Free PMC article.

2

Expression Profiler: next generation--an online platform for analysis of microarray data.

Kapushesky M, Kemmeren P, Culhane AC, Durinck S, Ihmels J, Körner C, Kull M, Torrente A, Sarkans U, Vilo J, Brazma A. Kapushesky M, et al. Among authors: vilo j. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W465-70. doi: 10.1093/nar/gkh470. Nucleic Acids Res. 2004. PMID: 15215431 Free PMC article.

3

g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments.

Reimand J, Kull M, Peterson H, Hansen J, Vilo J. Reimand J, et al. Among authors: vilo j. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W193-200. doi: 10.1093/nar/gkm226. Epub 2007 May 3. Nucleic Acids Res. 2007. PMID: 17478515 Free PMC article.

4

KEGGanim: pathway animations for high-throughput data.

Adler P, Reimand J, Jänes J, Kolde R, Peterson H, Vilo J. Adler P, et al. Among authors: vilo j. Bioinformatics. 2008 Feb 15;24(4):588-90. doi: 10.1093/bioinformatics/btm581. Epub 2007 Dec 1. Bioinformatics. 2008. PMID: 18056068

5

GraphWeb: mining heterogeneous biological networks for gene modules with functional significance.

Reimand J, Tooming L, Peterson H, Adler P, Vilo J. Reimand J, et al. Among authors: vilo j. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W452-9. doi: 10.1093/nar/gkn230. Epub 2008 May 6. Nucleic Acids Res. 2008. PMID: 18460544 Free PMC article.

6

Fast approximate hierarchical clustering using similarity heuristics.

Kull M, Vilo J. Kull M, et al. Among authors: vilo j. BioData Min. 2008 Sep 22;1(1):9. doi: 10.1186/1756-0381-1-9. BioData Min. 2008. PMID: 18822115 Free PMC article.

7

Peripheral gene expression profiling of CCK-4-induced panic in healthy subjects.

Maron E, Kallassalu K, Tammiste A, Kolde R, Vilo J, Tõru I, Vasar V, Shlik J, Metspalu A. Maron E, et al. Among authors: vilo j. Am J Med Genet B Neuropsychiatr Genet. 2010 Jan 5;153B(1):269-74. doi: 10.1002/ajmg.b.30898. Am J Med Genet B Neuropsychiatr Genet. 2010. PMID: 19051287

8

ASTD: The Alternative Splicing and Transcript Diversity database.

Koscielny G, Le Texier V, Gopalakrishnan C, Kumanduri V, Riethoven JJ, Nardone F, Stanley E, Fallsehr C, Hofmann O, Kull M, Harrington E, Boué S, Eyras E, Plass M, Lopez F, Ritchie W, Moucadel V, Ara T, Pospisil H, Herrmann A, G Reich J, Guigó R, Bork P, Doeberitz Mv, Vilo J, Hide W, Apweiler R, Thanaraj TA, Gautheret D. Koscielny G, et al. Among authors: vilo j. Genomics. 2009 Mar;93(3):213-20. doi: 10.1016/j.ygeno.2008.11.003. Epub 2008 Dec 24. Genomics. 2009. PMID: 19059335 Free article.

9

Three LIF-dependent signatures and gene clusters with atypical expression profiles, identified by transcriptome studies in mouse ES cells and early derivatives.

Trouillas M, Saucourt C, Guillotin B, Gauthereau X, Ding L, Buchholz F, Doss MX, Sachinidis A, Hescheler J, Hummel O, Huebner N, Kolde R, Vilo J, Schulz H, Boeuf H. Trouillas M, et al. Among authors: vilo j. BMC Genomics. 2009 Feb 9;10:73. doi: 10.1186/1471-2164-10-73. BMC Genomics. 2009. PMID: 19203379 Free PMC article.

10

Ranking genes by their co-expression to subsets of pathway members.

Adler P, Peterson H, Agius P, Reimand J, Vilo J. Adler P, et al. Among authors: vilo j. Ann N Y Acad Sci. 2009 Mar;1158:1-13. doi: 10.1111/j.1749-6632.2008.03747.x. Ann N Y Acad Sci. 2009. PMID: 19348627

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