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Page 1
BLAST+: architecture and applications.
Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL. Camacho C, et al. Among authors: coulouris g. BMC Bioinformatics. 2009 Dec 15;10:421. doi: 10.1186/1471-2105-10-421. BMC Bioinformatics. 2009. PMID: 20003500 Free PMC article.
Database indexing for production MegaBLAST searches.
Morgulis A, Coulouris G, Raytselis Y, Madden TL, Agarwala R, Schäffer AA. Morgulis A, et al. Among authors: coulouris g. Bioinformatics. 2008 Aug 15;24(16):1757-64. doi: 10.1093/bioinformatics/btn322. Epub 2008 Jun 21. Bioinformatics. 2008. PMID: 18567917 Free PMC article.
BLAST: a more efficient report with usability improvements.
Boratyn GM, Camacho C, Cooper PS, Coulouris G, Fong A, Ma N, Madden TL, Matten WT, McGinnis SD, Merezhuk Y, Raytselis Y, Sayers EW, Tao T, Ye J, Zaretskaya I. Boratyn GM, et al. Among authors: coulouris g. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W29-33. doi: 10.1093/nar/gkt282. Epub 2013 Apr 22. Nucleic Acids Res. 2013. PMID: 23609542 Free PMC article.
RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation.
Li W, O'Neill KR, Haft DH, DiCuccio M, Chetvernin V, Badretdin A, Coulouris G, Chitsaz F, Derbyshire MK, Durkin AS, Gonzales NR, Gwadz M, Lanczycki CJ, Song JS, Thanki N, Wang J, Yamashita RA, Yang M, Zheng C, Marchler-Bauer A, Thibaud-Nissen F. Li W, et al. Among authors: coulouris g. Nucleic Acids Res. 2021 Jan 8;49(D1):D1020-D1028. doi: 10.1093/nar/gkaa1105. Nucleic Acids Res. 2021. PMID: 33270901 Free PMC article.
RefSeq and the prokaryotic genome annotation pipeline in the age of metagenomes.
Haft DH, Badretdin A, Coulouris G, DiCuccio M, Durkin AS, Jovenitti E, Li W, Mersha M, O'Neill KR, Virothaisakun J, Thibaud-Nissen F. Haft DH, et al. Among authors: coulouris g. Nucleic Acids Res. 2024 Jan 5;52(D1):D762-D769. doi: 10.1093/nar/gkad988. Nucleic Acids Res. 2024. PMID: 37962425 Free PMC article.