Xuan J - Search Results

1

Identification of condition-specific regulatory modules through multi-level motif and mRNA expression analysis.

Chen L, Xuan J, Wang Y, Hoffman EP, Riggins RB, Clarke R. Chen L, et al. Among authors: xuan j. Int J Comput Biol Drug Des. 2009;2(1):1-20. doi: 10.1504/ijcbdd.2009.027582. Int J Comput Biol Drug Des. 2009. PMID: 20054984 Free PMC article.

2

Motif-directed network component analysis for regulatory network inference.

Wang C, Xuan J, Chen L, Zhao P, Wang Y, Clarke R, Hoffman E. Wang C, et al. Among authors: xuan j. BMC Bioinformatics. 2008;9 Suppl 1(Suppl 1):S21. doi: 10.1186/1471-2105-9-S1-S21. BMC Bioinformatics. 2008. PMID: 18315853 Free PMC article.

3

Knowledge-guided multi-scale independent component analysis for biomarker identification.

Chen L, Xuan J, Wang C, Shih IeM, Wang Y, Zhang Z, Hoffman E, Clarke R. Chen L, et al. Among authors: xuan j. BMC Bioinformatics. 2008 Oct 6;9:416. doi: 10.1186/1471-2105-9-416. BMC Bioinformatics. 2008. PMID: 18837990 Free PMC article.

4

Differential dependency network analysis to identify condition-specific topological changes in biological networks.

Zhang B, Li H, Riggins RB, Zhan M, Xuan J, Zhang Z, Hoffman EP, Clarke R, Wang Y. Zhang B, et al. Among authors: xuan j. Bioinformatics. 2009 Feb 15;25(4):526-32. doi: 10.1093/bioinformatics/btn660. Epub 2008 Dec 26. Bioinformatics. 2009. PMID: 19112081 Free PMC article.

5

Cross phenotype normalization of microarray data.

Xuan J, Wang Y, Hoffman E, Clarke R. Xuan J, et al. Front Biosci (Elite Ed). 2010 Jan 1;2(1):171-86. doi: 10.2741/e80. Front Biosci (Elite Ed). 2010. PMID: 20036868 Free article.

6

Biomarker identification by knowledge-driven multilevel ICA and motif analysis.

Chen L, Xuan J, Wang C, Wang Y, Shih IeM, Wang TL, Zhang Z, Clarke R, Hoffman EP. Chen L, et al. Among authors: xuan j. Int J Data Min Bioinform. 2009;3(4):365-81. doi: 10.1504/ijdmb.2009.029201. Int J Data Min Bioinform. 2009. PMID: 20052902

7

Multilevel support vector regression analysis to identify condition-specific regulatory networks.

Chen L, Xuan J, Riggins RB, Wang Y, Hoffman EP, Clarke R. Chen L, et al. Among authors: xuan j. Bioinformatics. 2010 Jun 1;26(11):1416-22. doi: 10.1093/bioinformatics/btq144. Epub 2010 Apr 7. Bioinformatics. 2010. PMID: 20375112 Free PMC article.

8

PUGSVM: a caBIG™ analytical tool for multiclass gene selection and predictive classification.

Yu G, Li H, Ha S, Shih IeM, Clarke R, Hoffman EP, Madhavan S, Xuan J, Wang Y. Yu G, et al. Among authors: xuan j. Bioinformatics. 2011 Mar 1;27(5):736-8. doi: 10.1093/bioinformatics/btq721. Epub 2010 Dec 24. Bioinformatics. 2011. PMID: 21186245 Free PMC article.

9

Motif-guided sparse decomposition of gene expression data for regulatory module identification.

Gong T, Xuan J, Chen L, Riggins RB, Li H, Hoffman EP, Clarke R, Wang Y. Gong T, et al. Among authors: xuan j. BMC Bioinformatics. 2011 Mar 22;12:82. doi: 10.1186/1471-2105-12-82. BMC Bioinformatics. 2011. PMID: 21426557 Free PMC article.

10

Identifying cancer biomarkers by network-constrained support vector machines.

Chen L, Xuan J, Riggins RB, Clarke R, Wang Y. Chen L, et al. Among authors: xuan j. BMC Syst Biol. 2011 Oct 12;5:161. doi: 10.1186/1752-0509-5-161. BMC Syst Biol. 2011. PMID: 21992556 Free PMC article.

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