Sidow A - Search Results

1

Jarid2/Jumonji coordinates control of PRC2 enzymatic activity and target gene occupancy in pluripotent cells.

Peng JC, Valouev A, Swigut T, Zhang J, Zhao Y, Sidow A, Wysocka J. Peng JC, et al. Among authors: sidow a. Cell. 2009 Dec 24;139(7):1290-302. doi: 10.1016/j.cell.2009.12.002. Cell. 2009. PMID: 20064375 Free PMC article.

2

Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data.

Valouev A, Johnson DS, Sundquist A, Medina C, Anton E, Batzoglou S, Myers RM, Sidow A. Valouev A, et al. Among authors: sidow a. Nat Methods. 2008 Sep;5(9):829-34. doi: 10.1038/nmeth.1246. Nat Methods. 2008. PMID: 19160518 Free PMC article.

3

An in vitro-identified high-affinity nucleosome-positioning signal is capable of transiently positioning a nucleosome in vivo.

Gracey LE, Chen ZY, Maniar JM, Valouev A, Sidow A, Kay MA, Fire AZ. Gracey LE, et al. Among authors: sidow a. Epigenetics Chromatin. 2010 Jul 1;3(1):13. doi: 10.1186/1756-8935-3-13. Epigenetics Chromatin. 2010. PMID: 20594331 Free PMC article.

4

Determinants of nucleosome organization in primary human cells.

Valouev A, Johnson SM, Boyd SD, Smith CL, Fire AZ, Sidow A. Valouev A, et al. Among authors: sidow a. Nature. 2011 May 22;474(7352):516-20. doi: 10.1038/nature10002. Nature. 2011. PMID: 21602827 Free PMC article.

5

A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning.

Valouev A, Ichikawa J, Tonthat T, Stuart J, Ranade S, Peckham H, Zeng K, Malek JA, Costa G, McKernan K, Sidow A, Fire A, Johnson SM. Valouev A, et al. Among authors: sidow a. Genome Res. 2008 Jul;18(7):1051-63. doi: 10.1101/gr.076463.108. Epub 2008 May 13. Genome Res. 2008. PMID: 18477713 Free PMC article.

6

Discovery of recurrent structural variants in nasopharyngeal carcinoma.

Valouev A, Weng Z, Sweeney RT, Varma S, Le QT, Kong C, Sidow A, West RB. Valouev A, et al. Among authors: sidow a. Genome Res. 2014 Feb;24(2):300-9. doi: 10.1101/gr.156224.113. Epub 2013 Nov 8. Genome Res. 2014. PMID: 24214394 Free PMC article.

7

Sequence first. Ask questions later.

Sidow A. Sidow A. Cell. 2002 Oct 4;111(1):13-6. doi: 10.1016/s0092-8674(02)01003-6. Cell. 2002. PMID: 12372296 Free article. Review.

8

Fruit fly family fun.

Sidow A, Lacroute P. Sidow A, et al. Cell. 2007 Dec 28;131(7):1222-3. doi: 10.1016/j.cell.2007.12.003. Cell. 2007. PMID: 18160030 Free article.

9

Inference of tumor phylogenies with improved somatic mutation discovery.

Salari R, Saleh SS, Kashef-Haghighi D, Khavari D, Newburger DE, West RB, Sidow A, Batzoglou S. Salari R, et al. Among authors: sidow a. J Comput Biol. 2013 Nov;20(11):933-44. doi: 10.1089/cmb.2013.0106. J Comput Biol. 2013. PMID: 24195709 Free PMC article.

10

Transcription-factor occupancy at HOT regions quantitatively predicts RNA polymerase recruitment in five human cell lines.

Foley JW, Sidow A. Foley JW, et al. Among authors: sidow a. BMC Genomics. 2013 Oct 20;14:720. doi: 10.1186/1471-2164-14-720. BMC Genomics. 2013. PMID: 24138567 Free PMC article.

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