Song JZ - Search Results

1

Consolidation of the cancer genome into domains of repressive chromatin by long-range epigenetic silencing (LRES) reduces transcriptional plasticity.

Coolen MW, Stirzaker C, Song JZ, Statham AL, Kassir Z, Moreno CS, Young AN, Varma V, Speed TP, Cowley M, Lacaze P, Kaplan W, Robinson MD, Clark SJ. Coolen MW, et al. Among authors: song jz. Nat Cell Biol. 2010 Mar;12(3):235-46. doi: 10.1038/ncb2023. Epub 2010 Feb 21. Nat Cell Biol. 2010. PMID: 20173741 Free PMC article.

2

Hypermethylation trigger of the glutathione-S-transferase gene (GSTP1) in prostate cancer cells.

Song JZ, Stirzaker C, Harrison J, Melki JR, Clark SJ. Song JZ, et al. Oncogene. 2002 Feb 7;21(7):1048-61. doi: 10.1038/sj.onc.1205153. Oncogene. 2002. PMID: 11850822

3

Identification and resolution of artifacts in bisulfite sequencing.

Warnecke PM, Stirzaker C, Song J, Grunau C, Melki JR, Clark SJ. Warnecke PM, et al. Methods. 2002 Jun;27(2):101-7. doi: 10.1016/s1046-2023(02)00060-9. Methods. 2002. PMID: 12095266

4

Transcriptional gene silencing promotes DNA hypermethylation through a sequential change in chromatin modifications in cancer cells.

Stirzaker C, Song JZ, Davidson B, Clark SJ. Stirzaker C, et al. Among authors: song jz. Cancer Res. 2004 Jun 1;64(11):3871-7. doi: 10.1158/0008-5472.CAN-03-3690. Cancer Res. 2004. PMID: 15172996

5

Permissive transcriptional activity at the centromere through pockets of DNA hypomethylation.

Wong NC, Wong LH, Quach JM, Canham P, Craig JM, Song JZ, Clark SJ, Choo KH. Wong NC, et al. Among authors: song jz. PLoS Genet. 2006 Feb;2(2):e17. doi: 10.1371/journal.pgen.0020017. Epub 2006 Feb 10. PLoS Genet. 2006. PMID: 16477312 Free PMC article.

6

Epigenetic remodeling in colorectal cancer results in coordinate gene suppression across an entire chromosome band.

Frigola J, Song J, Stirzaker C, Hinshelwood RA, Peinado MA, Clark SJ. Frigola J, et al. Nat Genet. 2006 May;38(5):540-9. doi: 10.1038/ng1781. Epub 2006 Apr 23. Nat Genet. 2006. PMID: 16642018

7

Aberrant de novo methylation of the p16INK4A CpG island is initiated post gene silencing in association with chromatin remodelling and mimics nucleosome positioning.

Hinshelwood RA, Melki JR, Huschtscha LI, Paul C, Song JZ, Stirzaker C, Reddel RR, Clark SJ. Hinshelwood RA, et al. Among authors: song jz. Hum Mol Genet. 2009 Aug 15;18(16):3098-109. doi: 10.1093/hmg/ddp251. Epub 2009 May 28. Hum Mol Genet. 2009. PMID: 19477956

8

Comparison of methyl-DNA immunoprecipitation (MeDIP) and methyl-CpG binding domain (MBD) protein capture for genome-wide DNA methylation analysis reveal CpG sequence coverage bias.

Nair SS, Coolen MW, Stirzaker C, Song JZ, Statham AL, Strbenac D, Robinson MD, Clark SJ. Nair SS, et al. Among authors: song jz. Epigenetics. 2011 Jan;6(1):34-44. doi: 10.4161/epi.6.1.13313. Epub 2011 Jan 1. Epigenetics. 2011. PMID: 20818161 Free article.

9

Evaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias, and copy number variation.

Robinson MD, Stirzaker C, Statham AL, Coolen MW, Song JZ, Nair SS, Strbenac D, Speed TP, Clark SJ. Robinson MD, et al. Among authors: song jz. Genome Res. 2010 Dec;20(12):1719-29. doi: 10.1101/gr.110601.110. Epub 2010 Nov 2. Genome Res. 2010. PMID: 21045081 Free PMC article.

10

Epigenetic deregulation across chromosome 2q14.2 differentiates normal from prostate cancer and provides a regional panel of novel DNA methylation cancer biomarkers.

Devaney J, Stirzaker C, Qu W, Song JZ, Statham AL, Patterson KI, Horvath LG, Tabor B, Coolen MW, Hulf T, Kench JG, Henshall SM, Pe Benito R, Haynes AM, Mayor R, Peinado MA, Sutherland RL, Clark SJ. Devaney J, et al. Among authors: song jz. Cancer Epidemiol Biomarkers Prev. 2011 Jan;20(1):148-59. doi: 10.1158/1055-9965.EPI-10-0719. Epub 2010 Nov 23. Cancer Epidemiol Biomarkers Prev. 2011. PMID: 21098650

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