Butte AJ - Search Results

1

Cell type-specific gene expression differences in complex tissues.

Shen-Orr SS, Tibshirani R, Khatri P, Bodian DL, Staedtler F, Perry NM, Hastie T, Sarwal MM, Davis MM, Butte AJ. Shen-Orr SS, et al. Among authors: butte aj. Nat Methods. 2010 Apr;7(4):287-9. doi: 10.1038/nmeth.1439. Epub 2010 Mar 7. Nat Methods. 2010. PMID: 20208531 Free PMC article.

2

Comparison of multiplex meta analysis techniques for understanding the acute rejection of solid organ transplants.

Morgan AA, Khatri P, Jones RH, Sarwal MM, Butte AJ. Morgan AA, et al. Among authors: butte aj. BMC Bioinformatics. 2010 Oct 28;11 Suppl 9(Suppl 9):S6. doi: 10.1186/1471-2105-11-S9-S6. BMC Bioinformatics. 2010. PMID: 21044364 Free PMC article.

3

Progressive histological damage in renal allografts is associated with expression of innate and adaptive immunity genes.

Naesens M, Khatri P, Li L, Sigdel TK, Vitalone MJ, Chen R, Butte AJ, Salvatierra O, Sarwal MM. Naesens M, et al. Among authors: butte aj. Kidney Int. 2011 Dec;80(12):1364-76. doi: 10.1038/ki.2011.245. Epub 2011 Aug 31. Kidney Int. 2011. PMID: 21881554 Free PMC article.

4

Identifying compartment-specific non-HLA targets after renal transplantation by integrating transcriptome and "antibodyome" measures.

Li L, Wadia P, Chen R, Kambham N, Naesens M, Sigdel TK, Miklos DB, Sarwal MM, Butte AJ. Li L, et al. Among authors: butte aj. Proc Natl Acad Sci U S A. 2009 Mar 17;106(11):4148-53. doi: 10.1073/pnas.0900563106. Epub 2009 Feb 27. Proc Natl Acad Sci U S A. 2009. PMID: 19251643 Free PMC article.

5

Expression of complement components differs between kidney allografts from living and deceased donors.

Naesens M, Li L, Ying L, Sansanwal P, Sigdel TK, Hsieh SC, Kambham N, Lerut E, Salvatierra O, Butte AJ, Sarwal MM. Naesens M, et al. Among authors: butte aj. J Am Soc Nephrol. 2009 Aug;20(8):1839-51. doi: 10.1681/ASN.2008111145. Epub 2009 May 14. J Am Soc Nephrol. 2009. PMID: 19443638 Free PMC article.

6

Protein microarrays identify antibodies to protein kinase Czeta that are associated with a greater risk of allograft loss in pediatric renal transplant recipients.

Sutherland SM, Li L, Sigdel TK, Wadia PP, Miklos DB, Butte AJ, Sarwal MM. Sutherland SM, et al. Among authors: butte aj. Kidney Int. 2009 Dec;76(12):1277-83. doi: 10.1038/ki.2009.384. Epub 2009 Oct 7. Kidney Int. 2009. PMID: 19812540 Free PMC article.

7

Differentially expressed RNA from public microarray data identifies serum protein biomarkers for cross-organ transplant rejection and other conditions.

Chen R, Sigdel TK, Li L, Kambham N, Dudley JT, Hsieh SC, Klassen RB, Chen A, Caohuu T, Morgan AA, Valantine HA, Khush KK, Sarwal MM, Butte AJ. Chen R, et al. Among authors: butte aj. PLoS Comput Biol. 2010 Sep 23;6(9):e1000940. doi: 10.1371/journal.pcbi.1000940. PLoS Comput Biol. 2010. PMID: 20885780 Free PMC article.

8

Ten years of pathway analysis: current approaches and outstanding challenges.

Khatri P, Sirota M, Butte AJ. Khatri P, et al. Among authors: butte aj. PLoS Comput Biol. 2012;8(2):e1002375. doi: 10.1371/journal.pcbi.1002375. Epub 2012 Feb 23. PLoS Comput Biol. 2012. PMID: 22383865 Free PMC article. Review.

9

A common rejection module (CRM) for acute rejection across multiple organs identifies novel therapeutics for organ transplantation.

Khatri P, Roedder S, Kimura N, De Vusser K, Morgan AA, Gong Y, Fischbein MP, Robbins RC, Naesens M, Butte AJ, Sarwal MM. Khatri P, et al. Among authors: butte aj. J Exp Med. 2013 Oct 21;210(11):2205-21. doi: 10.1084/jem.20122709. Epub 2013 Oct 14. J Exp Med. 2013. PMID: 24127489 Free PMC article.

10

ZeitZeiger: supervised learning for high-dimensional data from an oscillatory system.

Hughey JJ, Hastie T, Butte AJ. Hughey JJ, et al. Among authors: butte aj. Nucleic Acids Res. 2016 May 5;44(8):e80. doi: 10.1093/nar/gkw030. Epub 2016 Jan 26. Nucleic Acids Res. 2016. PMID: 26819407 Free PMC article.

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