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Page 1
microGalaxy: A gateway to tools, workflows, and training for reproducible and FAIR analysis of microbial data.
Nasr E, Amato P, Bhardwaj A, Blankenberg D, Brites D, Cumbo F, Do K, Ferrari E, Griffin TJ, Gruening B, Hiltemann S, Jagtap P, Mehta S, Métris KL, Momin S, Oba A, Pavloudi C, Pechlivanis N, Péguilhan R, Psomopoulos F, Rosic N, Schatz MC, Schiml VC, Siguret C, Soranzo N, Stubbs A, Van Heusden P, Vohra M; microGalaxy Community; Zierep P, Batut B. Nasr E, et al. Among authors: van heusden p. bioRxiv [Preprint]. 2024 Dec 27:2024.12.23.629682. doi: 10.1101/2024.12.23.629682. bioRxiv. 2024. PMID: 39764050 Free PMC article. Preprint.
The PHA4GE Microbial Data-Sharing Accord: establishing baseline consensus microbial data-sharing norms to facilitate cross-sectoral collaboration.
Griffiths EJ, van Heusden P, Tamuhla T, Lulamba ET, Bedeker A, Nichols M, Christoffels A, Tiffin N; Public Health Alliance for Genomic Epidemiology (PHA4GE) Ethics and Data Sharing Working Group. Griffiths EJ, et al. Among authors: van heusden p. BMJ Glob Health. 2024 Oct 30;9(10):e016474. doi: 10.1136/bmjgh-2024-016474. BMJ Glob Health. 2024. PMID: 39477336 Free PMC article.
A pan-African pathogen genomics data sharing platform to support disease outbreaks.
Christoffels A, Mboowa G, van Heusden P, Makhubela S, Githinji G, Mwangi S, Onywera H, Nnaemeka N, Amoako DG, Olawoye I, Diallo A, Mbala-Kingebeni P, Oyola SO, Adu B, Mvelase C, Ondoa P, Dratibi FA, Sow A, Gumede N, Tessema SK, Ouma AO, Tebeje YK. Christoffels A, et al. Among authors: van heusden p. Nat Med. 2023 May;29(5):1052-1055. doi: 10.1038/s41591-023-02266-y. Nat Med. 2023. PMID: 37161068 No abstract available.
Galaxy Training: A powerful framework for teaching!
Hiltemann S, Rasche H, Gladman S, Hotz HR, Larivière D, Blankenberg D, Jagtap PD, Wollmann T, Bretaudeau A, Goué N, Griffin TJ, Royaux C, Le Bras Y, Mehta S, Syme A, Coppens F, Droesbeke B, Soranzo N, Bacon W, Psomopoulos F, Gallardo-Alba C, Davis J, Föll MC, Fahrner M, Doyle MA, Serrano-Solano B, Fouilloux AC, van Heusden P, Maier W, Clements D, Heyl F; Galaxy Training Network; Grüning B, Batut B. Hiltemann S, et al. Among authors: van heusden p. PLoS Comput Biol. 2023 Jan 9;19(1):e1010752. doi: 10.1371/journal.pcbi.1010752. eCollection 2023 Jan. PLoS Comput Biol. 2023. PMID: 36622853 Free PMC article.
Expanding the Galaxy's reference data.
VijayKrishna N, Joshi J, Coraor N, Hillman-Jackson J, Bouvier D, van den Beek M, Eguinoa I, Coppens F, Davis J, Stolarczyk M, Sheffield NC, Gladman S, Cuccuru G, Grüning B, Soranzo N, Rasche H, Langhorst BW, Bernt M, Fornika D, de Lima Morais DA, Barrette M, van Heusden P, Petrillo M, Puertas-Gallardo A, Patak A, Hotz HR, Blankenberg D. VijayKrishna N, et al. Among authors: van heusden p. Bioinform Adv. 2022 Apr 29;2(1):vbac030. doi: 10.1093/bioadv/vbac030. eCollection 2022. Bioinform Adv. 2022. PMID: 35669346 Free PMC article.
26 results