Shaffer SA - Search Results

1

xComb: a cross-linked peptide database approach to protein-protein interaction analysis.

Panchaud A, Singh P, Shaffer SA, Goodlett DR. Panchaud A, et al. Among authors: shaffer sa. J Proteome Res. 2010 May 7;9(5):2508-15. doi: 10.1021/pr9011816. J Proteome Res. 2010. PMID: 20302351 Free PMC article.

2

Pro-CrossLink. Software tool for protein cross-linking and mass spectrometry.

Gao Q, Xue S, Doneanu CE, Shaffer SA, Goodlett DR, Nelson SD. Gao Q, et al. Among authors: shaffer sa. Anal Chem. 2006 Apr 1;78(7):2145-9. doi: 10.1021/ac051339c. Anal Chem. 2006. PMID: 16579592

3

Determination and comparison of the Francisella tularensis subsp.novicida U112 proteome to other bacterial proteomes.

Rohmer L, Guina T, Chen J, Gallis B, Taylor GK, Shaffer SA, Miller SI, Brittnacher MJ, Goodlett DR. Rohmer L, et al. Among authors: shaffer sa. J Proteome Res. 2008 May;7(5):2016-24. doi: 10.1021/pr700760z. Epub 2008 Apr 2. J Proteome Res. 2008. PMID: 18380474

4

Increasing information from shotgun proteomic data by accounting for misassigned precursor ion masses.

Scherl A, Tsai YS, Shaffer SA, Goodlett DR. Scherl A, et al. Among authors: shaffer sa. Proteomics. 2008 Jul;8(14):2791-7. doi: 10.1002/pmic.200800045. Proteomics. 2008. PMID: 18655048

5

Characterization of protein cross-links via mass spectrometry and an open-modification search strategy.

Singh P, Shaffer SA, Scherl A, Holman C, Pfuetzner RA, Larson Freeman TJ, Miller SI, Hernandez P, Appel RD, Goodlett DR. Singh P, et al. Among authors: shaffer sa. Anal Chem. 2008 Nov 15;80(22):8799-806. doi: 10.1021/ac801646f. Epub 2008 Oct 24. Anal Chem. 2008. PMID: 18947195 Free PMC article.

6

Minimize the detection of false positives by the software program DetectShift for 18O-labeled cross-linked peptide analysis.

Gao Q, Xue S, Shaffer SA, Doneanu CE, Goodlett DR, Nelson SD. Gao Q, et al. Among authors: shaffer sa. Eur J Mass Spectrom (Chichester). 2008;14(5):275-80. doi: 10.1255/ejms.939. Eur J Mass Spectrom (Chichester). 2008. PMID: 19023145 Free PMC article.

7

Identification of the interactions between cytochrome P450 2E1 and cytochrome b5 by mass spectrometry and site-directed mutagenesis.

Gao Q, Doneanu CE, Shaffer SA, Adman ET, Goodlett DR, Nelson SD. Gao Q, et al. Among authors: shaffer sa. J Biol Chem. 2006 Jul 21;281(29):20404-17. doi: 10.1074/jbc.M601785200. Epub 2006 May 5. J Biol Chem. 2006. PMID: 16679316 Free article.

8

Genome-specific gas-phase fractionation strategy for improved shotgun proteomic profiling of proteotypic peptides.

Scherl A, Shaffer SA, Taylor GK, Kulasekara HD, Miller SI, Goodlett DR. Scherl A, et al. Among authors: shaffer sa. Anal Chem. 2008 Feb 15;80(4):1182-91. doi: 10.1021/ac701680f. Epub 2008 Jan 23. Anal Chem. 2008. PMID: 18211032

9

On the benefits of acquiring peptide fragment ions at high measured mass accuracy.

Scherl A, Shaffer SA, Taylor GK, Hernandez P, Appel RD, Binz PA, Goodlett DR. Scherl A, et al. Among authors: shaffer sa. J Am Soc Mass Spectrom. 2008 Jun;19(6):891-901. doi: 10.1016/j.jasms.2008.02.005. Epub 2008 Mar 4. J Am Soc Mass Spectrom. 2008. PMID: 18417358 Free PMC article.

10

Tandem mass spectrometry investigation of ADP-ribosylated kemptide.

Hengel SM, Shaffer SA, Nunn BL, Goodlett DR. Hengel SM, et al. Among authors: shaffer sa. J Am Soc Mass Spectrom. 2009 Mar;20(3):477-83. doi: 10.1016/j.jasms.2008.10.025. Epub 2008 Nov 17. J Am Soc Mass Spectrom. 2009. PMID: 19070509 Free PMC article.

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