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113 results

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Page 1
Removing noise from pyrosequenced amplicons.
Quince C, Lanzen A, Davenport RJ, Turnbaugh PJ. Quince C, et al. BMC Bioinformatics. 2011 Jan 28;12:38. doi: 10.1186/1471-2105-12-38. BMC Bioinformatics. 2011. PMID: 21276213 Free PMC article.
Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.
Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Dröge J, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, Fritz A, Garrido-Oter R, Jørgensen TS, Shapiro N, Blood PD, Gurevich A, Bai Y, Turaev D, DeMaere MZ, Chikhi R, Nagarajan N, Quince C, Meyer F, Balvočiūtė M, Hansen LH, Sørensen SJ, Chia BKH, Denis B, Froula JL, Wang Z, Egan R, Don Kang D, Cook JJ, Deltel C, Beckstette M, Lemaitre C, Peterlongo P, Rizk G, Lavenier D, Wu YW, Singer SW, Jain C, Strous M, Klingenberg H, Meinicke P, Barton MD, Lingner T, Lin HH, Liao YC, Silva GGZ, Cuevas DA, Edwards RA, Saha S, Piro VC, Renard BY, Pop M, Klenk HP, Göker M, Kyrpides NC, Woyke T, Vorholt JA, Schulze-Lefert P, Rubin EM, Darling AE, Rattei T, McHardy AC. Sczyrba A, et al. Among authors: quince c. Nat Methods. 2017 Nov;14(11):1063-1071. doi: 10.1038/nmeth.4458. Epub 2017 Oct 2. Nat Methods. 2017. PMID: 28967888 Free PMC article.
Enterotypes in the landscape of gut microbial community composition.
Costea PI, Hildebrand F, Arumugam M, Bäckhed F, Blaser MJ, Bushman FD, de Vos WM, Ehrlich SD, Fraser CM, Hattori M, Huttenhower C, Jeffery IB, Knights D, Lewis JD, Ley RE, Ochman H, O'Toole PW, Quince C, Relman DA, Shanahan F, Sunagawa S, Wang J, Weinstock GM, Wu GD, Zeller G, Zhao L, Raes J, Knight R, Bork P. Costea PI, et al. Among authors: quince c. Nat Microbiol. 2018 Jan;3(1):8-16. doi: 10.1038/s41564-017-0072-8. Epub 2017 Dec 18. Nat Microbiol. 2018. PMID: 29255284 Free PMC article. Review.
Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project.
Gilbert JA, Meyer F, Antonopoulos D, Balaji P, Brown CT, Brown CT, Desai N, Eisen JA, Evers D, Field D, Feng W, Huson D, Jansson J, Knight R, Knight J, Kolker E, Konstantindis K, Kostka J, Kyrpides N, Mackelprang R, McHardy A, Quince C, Raes J, Sczyrba A, Shade A, Stevens R. Gilbert JA, et al. Among authors: quince c. Stand Genomic Sci. 2010 Dec 25;3(3):243-8. doi: 10.4056/sigs.1433550. Stand Genomic Sci. 2010. PMID: 21304727 Free PMC article.
UCHIME improves sensitivity and speed of chimera detection.
Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R. Edgar RC, et al. Among authors: quince c. Bioinformatics. 2011 Aug 15;27(16):2194-200. doi: 10.1093/bioinformatics/btr381. Epub 2011 Jun 23. Bioinformatics. 2011. PMID: 21700674 Free PMC article.
Niche specialization of terrestrial archaeal ammonia oxidizers.
Gubry-Rangin C, Hai B, Quince C, Engel M, Thomson BC, James P, Schloter M, Griffiths RI, Prosser JI, Nicol GW. Gubry-Rangin C, et al. Among authors: quince c. Proc Natl Acad Sci U S A. 2011 Dec 27;108(52):21206-11. doi: 10.1073/pnas.1109000108. Epub 2011 Dec 8. Proc Natl Acad Sci U S A. 2011. PMID: 22158986 Free PMC article.
Fluvial network organization imprints on microbial co-occurrence networks.
Widder S, Besemer K, Singer GA, Ceola S, Bertuzzo E, Quince C, Sloan WT, Rinaldo A, Battin TJ. Widder S, et al. Among authors: quince c. Proc Natl Acad Sci U S A. 2014 Sep 2;111(35):12799-804. doi: 10.1073/pnas.1411723111. Epub 2014 Aug 18. Proc Natl Acad Sci U S A. 2014. PMID: 25136087 Free PMC article.
113 results