Babak T - Search Results

1

Global survey of escape from X inactivation by RNA-sequencing in mouse.

Yang F, Babak T, Shendure J, Disteche CM. Yang F, et al. Among authors: babak t. Genome Res. 2010 May;20(5):614-22. doi: 10.1101/gr.103200.109. Epub 2010 Apr 2. Genome Res. 2010. PMID: 20363980 Free PMC article.

2

Global survey of genomic imprinting by transcriptome sequencing.

Babak T, Deveale B, Armour C, Raymond C, Cleary MA, van der Kooy D, Johnson JM, Lim LP. Babak T, et al. Curr Biol. 2008 Nov 25;18(22):1735-41. doi: 10.1016/j.cub.2008.09.044. Curr Biol. 2008. PMID: 19026546 Free article.

3

Dynamics of gene silencing during X inactivation using allele-specific RNA-seq.

Marks H, Kerstens HH, Barakat TS, Splinter E, Dirks RA, van Mierlo G, Joshi O, Wang SY, Babak T, Albers CA, Kalkan T, Smith A, Jouneau A, de Laat W, Gribnau J, Stunnenberg HG. Marks H, et al. Among authors: babak t. Genome Biol. 2015 Aug 3;16(1):149. doi: 10.1186/s13059-015-0698-x. Genome Biol. 2015. PMID: 26235224 Free PMC article.

4

Genetic conflict reflected in tissue-specific maps of genomic imprinting in human and mouse.

Babak T, DeVeale B, Tsang EK, Zhou Y, Li X, Smith KS, Kukurba KR, Zhang R, Li JB, van der Kooy D, Montgomery SB, Fraser HB. Babak T, et al. Nat Genet. 2015 May;47(5):544-9. doi: 10.1038/ng.3274. Epub 2015 Apr 13. Nat Genet. 2015. PMID: 25848752 Free PMC article.

5

Systematic detection of polygenic cis-regulatory evolution.

Fraser HB, Babak T, Tsang J, Zhou Y, Zhang B, Mehrabian M, Schadt EE. Fraser HB, et al. Among authors: babak t. PLoS Genet. 2011 Mar;7(3):e1002023. doi: 10.1371/journal.pgen.1002023. Epub 2011 Mar 31. PLoS Genet. 2011. PMID: 21483757 Free PMC article.

6

Genetic validation of whole-transcriptome sequencing for mapping expression affected by cis-regulatory variation.

Babak T, Garrett-Engele P, Armour CD, Raymond CK, Keller MP, Chen R, Rohl CA, Johnson JM, Attie AD, Fraser HB, Schadt EE. Babak T, et al. BMC Genomics. 2010 Aug 13;11:473. doi: 10.1186/1471-2164-11-473. BMC Genomics. 2010. PMID: 20707912 Free PMC article.

7

Digital transcriptome profiling using selective hexamer priming for cDNA synthesis.

Armour CD, Castle JC, Chen R, Babak T, Loerch P, Jackson S, Shah JK, Dey J, Rohl CA, Johnson JM, Raymond CK. Armour CD, et al. Among authors: babak t. Nat Methods. 2009 Sep;6(9):647-9. doi: 10.1038/nmeth.1360. Epub 2009 Aug 9. Nat Methods. 2009. PMID: 19668204

8

A quantitative atlas of polyadenylation in five mammals.

Derti A, Garrett-Engele P, Macisaac KD, Stevens RC, Sriram S, Chen R, Rohl CA, Johnson JM, Babak T. Derti A, et al. Among authors: babak t. Genome Res. 2012 Jun;22(6):1173-83. doi: 10.1101/gr.132563.111. Epub 2012 Mar 27. Genome Res. 2012. PMID: 22454233 Free PMC article.

9

NSR-seq transcriptional profiling enables identification of a gene signature of Plasmodium falciparum parasites infecting children.

Vignali M, Armour CD, Chen J, Morrison R, Castle JC, Biery MC, Bouzek H, Moon W, Babak T, Fried M, Raymond CK, Duffy PE. Vignali M, et al. Among authors: babak t. J Clin Invest. 2011 Mar;121(3):1119-29. doi: 10.1172/JCI43457. Epub 2011 Feb 7. J Clin Invest. 2011. PMID: 21317536 Free PMC article.

10

Erratum to: Dynamics of gene silencing during X inactivation using allele-specific RNA-seq.

Marks H, Kerstens HH, Barakat TS, Splinter E, Dirks RA, van Mierlo G, Joshi O, Wang SY, Babak T, Albers CA, Kalkan T, Smith A, Jouneau A, de Laat W, Gribnau J, Stunnenberg HG. Marks H, et al. Among authors: babak t. Genome Biol. 2016 Feb 5;17:22. doi: 10.1186/s13059-016-0885-4. Genome Biol. 2016. PMID: 26850229 Free PMC article. No abstract available.

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