Tomita M - Search Results

1

Core promoter structure and genomic context reflect histone 3 lysine 9 acetylation patterns.

Kratz A, Arner E, Saito R, Kubosaki A, Kawai J, Suzuki H, Carninci P, Arakawa T, Tomita M, Hayashizaki Y, Daub CO. Kratz A, et al. Among authors: tomita m. BMC Genomics. 2010 Apr 21;11:257. doi: 10.1186/1471-2164-11-257. BMC Genomics. 2010. PMID: 20409305 Free PMC article.

2

Inferring alternative splicing patterns in mouse from a full-length cDNA library and microarray data.

Kochiwa H, Suzuki R, Washio T, Saito R, Bono H, Carninci P, Okazaki Y, Miki R, Hayashizaki Y, Tomita M; RIKEN Genome Exploration Research Group Phase II Team. Kochiwa H, et al. Among authors: tomita m. Genome Res. 2002 Aug;12(8):1286-93. doi: 10.1101/gr.220302. Genome Res. 2002. PMID: 12176936 Free PMC article.

3

Identification of putative noncoding RNAs among the RIKEN mouse full-length cDNA collection.

Numata K, Kanai A, Saito R, Kondo S, Adachi J, Wilming LG, Hume DA, Hayashizaki Y, Tomita M; RIKEN GER Group; GSL Members. Numata K, et al. Among authors: tomita m. Genome Res. 2003 Jun;13(6B):1301-6. doi: 10.1101/gr.1011603. Genome Res. 2003. PMID: 12819127 Free PMC article.

4

Computational analysis of stop codon readthrough in D.melanogaster.

Sato M, Umeki H, Saito R, Kanai A, Tomita M. Sato M, et al. Among authors: tomita m. Bioinformatics. 2003 Jul 22;19(11):1371-80. doi: 10.1093/bioinformatics/btg183. Bioinformatics. 2003. PMID: 12874049

5

A novel feature of microsatellites in plants: a distribution gradient along the direction of transcription.

Fujimori S, Washio T, Higo K, Ohtomo Y, Murakami K, Matsubara K, Kawai J, Carninci P, Hayashizaki Y, Kikuchi S, Tomita M. Fujimori S, et al. Among authors: tomita m. FEBS Lett. 2003 Nov 6;554(1-2):17-22. doi: 10.1016/s0014-5793(03)01041-x. FEBS Lett. 2003. PMID: 14596907 Free article.

6

A new role for expressed pseudogenes as ncRNA: regulation of mRNA stability of its homologous coding gene.

Yano Y, Saito R, Yoshida N, Yoshiki A, Wynshaw-Boris A, Tomita M, Hirotsune S. Yano Y, et al. Among authors: tomita m. J Mol Med (Berl). 2004 Jul;82(7):414-22. doi: 10.1007/s00109-004-0550-3. Epub 2004 May 18. J Mol Med (Berl). 2004. PMID: 15148580

7

The 'weighted sum of relative entropy': a new index for synonymous codon usage bias.

Suzuki H, Saito R, Tomita M. Suzuki H, et al. Among authors: tomita m. Gene. 2004 Jun 23;335:19-23. doi: 10.1016/j.gene.2004.03.001. Gene. 2004. PMID: 15194186

8

Computational analysis suggests that alternative first exons are involved in tissue-specific transcription in rice (Oryza sativa).

Kitagawa N, Washio T, Kosugi S, Yamashita T, Higashi K, Yanagawa H, Higo K, Satoh K, Ohtomo Y, Sunako T, Murakami K, Matsubara K, Kawai J, Carninci P, Hayashizaki Y, Kikuchi S, Tomita M. Kitagawa N, et al. Among authors: tomita m. Bioinformatics. 2005 May 1;21(9):1758-63. doi: 10.1093/bioinformatics/bti253. Epub 2005 Jan 12. Bioinformatics. 2005. PMID: 15647298

9

[Refinement of genome-wide data].

Saito R, Suzuki H, Tomita M. Saito R, et al. Among authors: tomita m. Tanpakushitsu Kakusan Koso. 2004 Dec;49(17 Suppl):2882-8. Tanpakushitsu Kakusan Koso. 2004. PMID: 15669271 Review. Japanese. No abstract available.

10

A problem in multivariate analysis of codon usage data and a possible solution.

Suzuki H, Saito R, Tomita M. Suzuki H, et al. Among authors: tomita m. FEBS Lett. 2005 Nov 21;579(28):6499-504. doi: 10.1016/j.febslet.2005.10.032. Epub 2005 Nov 2. FEBS Lett. 2005. PMID: 16289058 Free article.

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