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Page 1
SAGE2Splice: unmapped SAGE tags reveal novel splice junctions.
Kuo BY, Chen Y, Bohacec S, Johansson O, Wasserman WW, Simpson EM. Kuo BY, et al. Among authors: wasserman ww. PLoS Comput Biol. 2006 Apr;2(4):e34. doi: 10.1371/journal.pcbi.0020034. Epub 2006 Apr 28. PLoS Comput Biol. 2006. PMID: 16683015 Free PMC article.
ORegAnno: an open-access community-driven resource for regulatory annotation.
Griffith OL, Montgomery SB, Bernier B, Chu B, Kasaian K, Aerts S, Mahony S, Sleumer MC, Bilenky M, Haeussler M, Griffith M, Gallo SM, Giardine B, Hooghe B, Van Loo P, Blanco E, Ticoll A, Lithwick S, Portales-Casamar E, Donaldson IJ, Robertson G, Wadelius C, De Bleser P, Vlieghe D, Halfon MS, Wasserman W, Hardison R, Bergman CM, Jones SJ; Open Regulatory Annotation Consortium. Griffith OL, et al. Nucleic Acids Res. 2008 Jan;36(Database issue):D107-13. doi: 10.1093/nar/gkm967. Epub 2007 Nov 15. Nucleic Acids Res. 2008. PMID: 18006570 Free PMC article.
Identification of a set of genes showing regionally enriched expression in the mouse brain.
D'Souza CA, Chopra V, Varhol R, Xie YY, Bohacec S, Zhao Y, Lee LL, Bilenky M, Portales-Casamar E, He A, Wasserman WW, Goldowitz D, Marra MA, Holt RA, Simpson EM, Jones SJ. D'Souza CA, et al. Among authors: wasserman ww. BMC Neurosci. 2008 Jul 14;9:66. doi: 10.1186/1471-2202-9-66. BMC Neurosci. 2008. PMID: 18625066 Free PMC article.
A regulatory toolbox of MiniPromoters to drive selective expression in the brain.
Portales-Casamar E, Swanson DJ, Liu L, de Leeuw CN, Banks KG, Ho Sui SJ, Fulton DL, Ali J, Amirabbasi M, Arenillas DJ, Babyak N, Black SF, Bonaguro RJ, Brauer E, Candido TR, Castellarin M, Chen J, Chen Y, Cheng JC, Chopra V, Docking TR, Dreolini L, D'Souza CA, Flynn EK, Glenn R, Hatakka K, Hearty TG, Imanian B, Jiang S, Khorasan-zadeh S, Komljenovic I, Laprise S, Liao NY, Lim JS, Lithwick S, Liu F, Liu J, Lu M, McConechy M, McLeod AJ, Milisavljevic M, Mis J, O'Connor K, Palma B, Palmquist DL, Schmouth JF, Swanson MI, Tam B, Ticoll A, Turner JL, Varhol R, Vermeulen J, Watkins RF, Wilson G, Wong BK, Wong SH, Wong TY, Yang GS, Ypsilanti AR, Jones SJ, Holt RA, Goldowitz D, Wasserman WW, Simpson EM. Portales-Casamar E, et al. Among authors: wasserman ww. Proc Natl Acad Sci U S A. 2010 Sep 21;107(38):16589-94. doi: 10.1073/pnas.1009158107. Epub 2010 Aug 31. Proc Natl Acad Sci U S A. 2010. PMID: 20807748 Free PMC article.
MIR@NT@N: a framework integrating transcription factors, microRNAs and their targets to identify sub-network motifs in a meta-regulation network model.
Le Béchec A, Portales-Casamar E, Vetter G, Moes M, Zindy PJ, Saumet A, Arenillas D, Theillet C, Wasserman WW, Lecellier CH, Friederich E. Le Béchec A, et al. Among authors: wasserman ww. BMC Bioinformatics. 2011 Mar 4;12:67. doi: 10.1186/1471-2105-12-67. BMC Bioinformatics. 2011. PMID: 21375730 Free PMC article.
221 results