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High-resolution analysis of intrahost genetic diversity in dengue virus serotype 1 infection identifies mixed infections.
Thai KT, Henn MR, Zody MC, Tricou V, Nguyet NM, Charlebois P, Lennon NJ, Green L, de Vries PJ, Hien TT, Farrar J, van Doorn HR, de Jong MD, Birren BW, Holmes EC, Simmons CP. Thai KT, et al. Among authors: holmes ec. J Virol. 2012 Jan;86(2):835-43. doi: 10.1128/JVI.05985-11. Epub 2011 Nov 16. J Virol. 2012. PMID: 22090119 Free PMC article.
The evolutionary dynamics of influenza A virus adaptation to mammalian hosts.
Bhatt S, Lam TT, Lycett SJ, Leigh Brown AJ, Bowden TA, Holmes EC, Guan Y, Wood JL, Brown IH, Kellam P; Combating Swine Influenza Consortium; Pybus OG. Bhatt S, et al. Among authors: holmes ec. Philos Trans R Soc Lond B Biol Sci. 2013 Feb 4;368(1614):20120382. doi: 10.1098/rstb.2012.0382. Print 2013 Mar 19. Philos Trans R Soc Lond B Biol Sci. 2013. PMID: 23382435 Free PMC article.
A generic assay for whole-genome amplification and deep sequencing of enterovirus A71.
Tan le V, Tuyen NT, Thanh TT, Ngan TT, Van HM, Sabanathan S, Van TT, Thanh le TM, Nguyet LA, Geoghegan JL, Ong KC, Perera D, Hang VT, Ny NT, Anh NT, Ha do Q, Qui PT, Viet do C, Tuan HM, Wong KT, Holmes EC, Chau NV, Thwaites G, van Doorn HR. Tan le V, et al. Among authors: holmes ec. J Virol Methods. 2015 Apr;215-216:30-6. doi: 10.1016/j.jviromet.2015.02.011. Epub 2015 Feb 19. J Virol Methods. 2015. PMID: 25704598 Free PMC article.
Phylodynamics of Enterovirus A71-Associated Hand, Foot, and Mouth Disease in Viet Nam.
Geoghegan JL, Tan le V, Kühnert D, Halpin RA, Lin X, Simenauer A, Akopov A, Das SR, Stockwell TB, Shrivastava S, Ngoc NM, Uyen le TT, Tuyen NT, Thanh TT, Hang VT, Qui PT, Hung NT, Khanh TH, Thinh le Q, Nhan le NT, Van HM, Viet do C, Tuan HM, Viet HL, Hien TT, Chau NV, Thwaites G, Grenfell BT, Stadler T, Wentworth DE, Holmes EC, Van Doorn HR. Geoghegan JL, et al. Among authors: holmes ec. J Virol. 2015 Sep;89(17):8871-9. doi: 10.1128/JVI.00706-15. Epub 2015 Jun 17. J Virol. 2015. PMID: 26085170 Free PMC article.
Viral CpG Deficiency Provides No Evidence That Dogs Were Intermediate Hosts for SARS-CoV-2.
Pollock DD, Castoe TA, Perry BW, Lytras S, Wade KJ, Robertson DL, Holmes EC, Boni MF, Kosakovsky Pond SL, Parry R, Carlton EJ, Wood JLN, Pennings PS, Goldstein RA. Pollock DD, et al. Among authors: holmes ec. Mol Biol Evol. 2020 Sep 1;37(9):2706-2710. doi: 10.1093/molbev/msaa178. Mol Biol Evol. 2020. PMID: 32658964 Free PMC article.
967 results