Kaufmann K - Search Results

1

A physical model for PDZ-domain/peptide interactions.

Kaufmann K, Shen N, Mizoue L, Meiler J. Kaufmann K, et al. J Mol Model. 2011 Feb;17(2):315-24. doi: 10.1007/s00894-010-0725-5. Epub 2010 May 12. J Mol Model. 2011. PMID: 20461427 Free PMC article.

2

Prediction of HIV-1 protease/inhibitor affinity using RosettaLigand.

Lemmon G, Kaufmann K, Meiler J. Lemmon G, et al. Among authors: kaufmann k. Chem Biol Drug Des. 2012 Jun;79(6):888-96. doi: 10.1111/j.1747-0285.2012.01356.x. Epub 2012 Mar 19. Chem Biol Drug Des. 2012. PMID: 22321894 Free PMC article.

3

Computational design of an endo-1,4-beta-xylanase ligand binding site.

Morin A, Kaufmann KW, Fortenberry C, Harp JM, Mizoue LS, Meiler J. Morin A, et al. Protein Eng Des Sel. 2011 Jun;24(6):503-16. doi: 10.1093/protein/gzr006. Epub 2011 Feb 24. Protein Eng Des Sel. 2011. PMID: 21349882 Free PMC article.

4

Using RosettaLigand for small molecule docking into comparative models.

Kaufmann KW, Meiler J. Kaufmann KW, et al. PLoS One. 2012;7(12):e50769. doi: 10.1371/journal.pone.0050769. Epub 2012 Dec 11. PLoS One. 2012. PMID: 23239984 Free PMC article.

5

Simultaneous prediction of binding free energy and specificity for PDZ domain-peptide interactions.

Crivelli JJ, Lemmon G, Kaufmann KW, Meiler J. Crivelli JJ, et al. J Comput Aided Mol Des. 2013 Dec;27(12):1051-65. doi: 10.1007/s10822-013-9696-9. Epub 2013 Dec 5. J Comput Aided Mol Des. 2013. PMID: 24305904 Free PMC article.

6

Y95 and E444 interaction required for high-affinity S-citalopram binding in the human serotonin transporter.

Combs S, Kaufmann K, Field JR, Blakely RD, Meiler J. Combs S, et al. Among authors: kaufmann k. ACS Chem Neurosci. 2011 Feb 16;2(2):75-81. doi: 10.1021/cn100066p. Epub 2010 Oct 27. ACS Chem Neurosci. 2011. PMID: 22778858 Free PMC article. Review.

7

Structural determinants of species-selective substrate recognition in human and Drosophila serotonin transporters revealed through computational docking studies.

Kaufmann KW, Dawson ES, Henry LK, Field JR, Blakely RD, Meiler J. Kaufmann KW, et al. Proteins. 2009 Feb 15;74(3):630-42. doi: 10.1002/prot.22178. Proteins. 2009. PMID: 18704946 Free PMC article.

8

Practically useful: what the Rosetta protein modeling suite can do for you.

Kaufmann KW, Lemmon GH, Deluca SL, Sheehan JH, Meiler J. Kaufmann KW, et al. Biochemistry. 2010 Apr 13;49(14):2987-98. doi: 10.1021/bi902153g. Biochemistry. 2010. PMID: 20235548 Free PMC article. Review.

9

Design and directed evolution of a dideoxy purine nucleoside phosphorylase.

Nannemann DP, Kaufmann KW, Meiler J, Bachmann BO. Nannemann DP, et al. Protein Eng Des Sel. 2010 Aug;23(8):607-16. doi: 10.1093/protein/gzq033. Epub 2010 Jun 4. Protein Eng Des Sel. 2010. PMID: 20525731 Free PMC article.

10

RosettaEPR: rotamer library for spin label structure and dynamics.

Alexander NS, Stein RA, Koteiche HA, Kaufmann KW, McHaourab HS, Meiler J. Alexander NS, et al. PLoS One. 2013 Sep 5;8(9):e72851. doi: 10.1371/journal.pone.0072851. eCollection 2013. PLoS One. 2013. PMID: 24039810 Free PMC article.

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