Bafna V - Search Results

1

TCLUST: a fast method for clustering genome-scale expression data.

Dost B, Wu C, Su A, Bafna V. Dost B, et al. Among authors: bafna v. IEEE/ACM Trans Comput Biol Bioinform. 2011 May-Jun;8(3):808-18. doi: 10.1109/TCBB.2010.34. IEEE/ACM Trans Comput Biol Bioinform. 2011. PMID: 20479508

2

Identification of post-translational modifications via blind search of mass-spectra.

Tsur D, Tanner S, Zandi E, Bafna V, Pevzner PA. Tsur D, et al. Among authors: bafna v. Proc IEEE Comput Syst Bioinform Conf. 2005:157-66. doi: 10.1109/csb.2005.34. Proc IEEE Comput Syst Bioinform Conf. 2005. PMID: 16447973

3

FastR: fast database search tool for non-coding RNA.

Bafna V, Zhang S. Bafna V, et al. Proc IEEE Comput Syst Bioinform Conf. 2004:52-61. doi: 10.1109/csb.2004.1332417. Proc IEEE Comput Syst Bioinform Conf. 2004. PMID: 16447999

4

Inference about recombination from haplotype data: lower bounds and recombination hotspots.

Bafna V, Bansal V. Bafna V, et al. J Comput Biol. 2006 Mar;13(2):501-21. doi: 10.1089/cmb.2006.13.501. J Comput Biol. 2006. PMID: 16597254

5

Searching genomes for noncoding RNA using FastR.

Zhang S, Haas B, Eskin E, Bafna V. Zhang S, et al. Among authors: bafna v. IEEE/ACM Trans Comput Biol Bioinform. 2005 Oct-Dec;2(4):366-79. doi: 10.1109/TCBB.2005.57. IEEE/ACM Trans Comput Biol Bioinform. 2005. PMID: 17044173

6

The number of recombination events in a sample history: conflict graph and lower bounds.

Bafna V, Bansal V. Bafna V, et al. IEEE/ACM Trans Comput Biol Bioinform. 2004 Apr-Jun;1(2):78-90. doi: 10.1109/TCBB.2004.23. IEEE/ACM Trans Comput Biol Bioinform. 2004. PMID: 17048383

7

A decomposition theory for phylogenetic networks and incompatible characters.

Gusfield D, Bansal V, Bafna V, Song YS. Gusfield D, et al. Among authors: bafna v. J Comput Biol. 2007 Dec;14(10):1247-72. doi: 10.1089/cmb.2006.0137. J Comput Biol. 2007. PMID: 18047426 Free PMC article.

8

Structural alignment of pseudoknotted RNA.

Han B, Dost B, Bafna V, Zhang S. Han B, et al. Among authors: bafna v. J Comput Biol. 2008 Jun;15(5):489-504. doi: 10.1089/cmb.2007.0214. J Comput Biol. 2008. PMID: 18549303

9

An MCMC algorithm for haplotype assembly from whole-genome sequence data.

Bansal V, Halpern AL, Axelrod N, Bafna V. Bansal V, et al. Among authors: bafna v. Genome Res. 2008 Aug;18(8):1336-46. doi: 10.1101/gr.077065.108. Genome Res. 2008. PMID: 18676820 Free PMC article.

10

QNet: a tool for querying protein interaction networks.

Dost B, Shlomi T, Gupta N, Ruppin E, Bafna V, Sharan R. Dost B, et al. Among authors: bafna v. J Comput Biol. 2008 Sep;15(7):913-25. doi: 10.1089/cmb.2007.0172. J Comput Biol. 2008. PMID: 18707533

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