Barrett CL - Search Results

1

De Novo assembly of the complete genome of an enhanced electricity-producing variant of Geobacter sulfurreducens using only short reads.

Nagarajan H, Butler JE, Klimes A, Qiu Y, Zengler K, Ward J, Young ND, Methé BA, Palsson BØ, Lovley DR, Barrett CL. Nagarajan H, et al. Among authors: barrett cl. PLoS One. 2010 Jun 8;5(6):e10922. doi: 10.1371/journal.pone.0010922. PLoS One. 2010. PMID: 20544019 Free PMC article.

2

A c-type cytochrome and a transcriptional regulator responsible for enhanced extracellular electron transfer in Geobacter sulfurreducens revealed by adaptive evolution.

Tremblay PL, Summers ZM, Glaven RH, Nevin KP, Zengler K, Barrett CL, Qiu Y, Palsson BO, Lovley DR. Tremblay PL, et al. Among authors: barrett cl. Environ Microbiol. 2011 Jan;13(1):13-23. doi: 10.1111/j.1462-2920.2010.02302.x. Environ Microbiol. 2011. PMID: 20636372

3

Iterative reconstruction of transcriptional regulatory networks: an algorithmic approach.

Barrett CL, Palsson BO. Barrett CL, et al. PLoS Comput Biol. 2006 May;2(5):e52. doi: 10.1371/journal.pcbi.0020052. Epub 2006 May 19. PLoS Comput Biol. 2006. PMID: 16710450 Free PMC article.

4

Systems biology as a foundation for genome-scale synthetic biology.

Barrett CL, Kim TY, Kim HU, Palsson BØ, Lee SY. Barrett CL, et al. Curr Opin Biotechnol. 2006 Oct;17(5):488-92. doi: 10.1016/j.copbio.2006.08.001. Epub 2006 Aug 23. Curr Opin Biotechnol. 2006. PMID: 16934450 Review.

5

Genome-scale reconstruction of the Lrp regulatory network in Escherichia coli.

Cho BK, Barrett CL, Knight EM, Park YS, Palsson BØ. Cho BK, et al. Among authors: barrett cl. Proc Natl Acad Sci U S A. 2008 Dec 9;105(49):19462-7. doi: 10.1073/pnas.0807227105. Epub 2008 Dec 3. Proc Natl Acad Sci U S A. 2008. PMID: 19052235 Free PMC article.

6

The transcription unit architecture of the Escherichia coli genome.

Cho BK, Zengler K, Qiu Y, Park YS, Knight EM, Barrett CL, Gao Y, Palsson BØ. Cho BK, et al. Among authors: barrett cl. Nat Biotechnol. 2009 Nov;27(11):1043-9. doi: 10.1038/nbt.1582. Epub 2009 Nov 1. Nat Biotechnol. 2009. PMID: 19881496 Free PMC article.

7

Cumulative number of cell divisions as a meaningful timescale for adaptive laboratory evolution of Escherichia coli.

Lee DH, Feist AM, Barrett CL, Palsson BØ. Lee DH, et al. Among authors: barrett cl. PLoS One. 2011;6(10):e26172. doi: 10.1371/journal.pone.0026172. Epub 2011 Oct 18. PLoS One. 2011. PMID: 22028828 Free PMC article.

8

Characterizing the interplay between multiple levels of organization within bacterial sigma factor regulatory networks.

Qiu Y, Nagarajan H, Embree M, Shieu W, Abate E, Juárez K, Cho BK, Elkins JG, Nevin KP, Barrett CL, Lovley DR, Palsson BO, Zengler K. Qiu Y, et al. Among authors: barrett cl. Nat Commun. 2013;4:1755. doi: 10.1038/ncomms2743. Nat Commun. 2013. PMID: 23612296 Free article.

9

The global transcriptional regulatory network for metabolism in Escherichia coli exhibits few dominant functional states.

Barrett CL, Herring CD, Reed JL, Palsson BO. Barrett CL, et al. Proc Natl Acad Sci U S A. 2005 Dec 27;102(52):19103-8. doi: 10.1073/pnas.0505231102. Epub 2005 Dec 15. Proc Natl Acad Sci U S A. 2005. PMID: 16357206 Free PMC article.

10

Network-level analysis of metabolic regulation in the human red blood cell using random sampling and singular value decomposition.

Barrett CL, Price ND, Palsson BO. Barrett CL, et al. BMC Bioinformatics. 2006 Mar 13;7:132. doi: 10.1186/1471-2105-7-132. BMC Bioinformatics. 2006. PMID: 16533395 Free PMC article.

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