Palsson BØ - Search Results

1

De Novo assembly of the complete genome of an enhanced electricity-producing variant of Geobacter sulfurreducens using only short reads.

Nagarajan H, Butler JE, Klimes A, Qiu Y, Zengler K, Ward J, Young ND, Methé BA, Palsson BØ, Lovley DR, Barrett CL. Nagarajan H, et al. Among authors: palsson bo. PLoS One. 2010 Jun 8;5(6):e10922. doi: 10.1371/journal.pone.0010922. PLoS One. 2010. PMID: 20544019 Free PMC article.

2

Genome-scale analysis of the uses of the Escherichia coli genome: model-driven analysis of heterogeneous data sets.

Allen TE, Herrgård MJ, Liu M, Qiu Y, Glasner JD, Blattner FR, Palsson BØ. Allen TE, et al. Among authors: palsson bo. J Bacteriol. 2003 Nov;185(21):6392-9. doi: 10.1128/JB.185.21.6392-6399.2003. J Bacteriol. 2003. PMID: 14563874 Free PMC article.

3

The global transcriptional regulatory network for metabolism in Escherichia coli exhibits few dominant functional states.

Barrett CL, Herring CD, Reed JL, Palsson BO. Barrett CL, et al. Among authors: palsson bo. Proc Natl Acad Sci U S A. 2005 Dec 27;102(52):19103-8. doi: 10.1073/pnas.0505231102. Epub 2005 Dec 15. Proc Natl Acad Sci U S A. 2005. PMID: 16357206 Free PMC article.

4

Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling.

Mahadevan R, Bond DR, Butler JE, Esteve-Nuñez A, Coppi MV, Palsson BO, Schilling CH, Lovley DR. Mahadevan R, et al. Among authors: palsson bo. Appl Environ Microbiol. 2006 Feb;72(2):1558-68. doi: 10.1128/AEM.72.2.1558-1568.2006. Appl Environ Microbiol. 2006. PMID: 16461711 Free PMC article.

5

Network-level analysis of metabolic regulation in the human red blood cell using random sampling and singular value decomposition.

Barrett CL, Price ND, Palsson BO. Barrett CL, et al. Among authors: palsson bo. BMC Bioinformatics. 2006 Mar 13;7:132. doi: 10.1186/1471-2105-7-132. BMC Bioinformatics. 2006. PMID: 16533395 Free PMC article.

6

Iterative reconstruction of transcriptional regulatory networks: an algorithmic approach.

Barrett CL, Palsson BO. Barrett CL, et al. Among authors: palsson bo. PLoS Comput Biol. 2006 May;2(5):e52. doi: 10.1371/journal.pcbi.0020052. Epub 2006 May 19. PLoS Comput Biol. 2006. PMID: 16710450 Free PMC article.

7

Systems biology as a foundation for genome-scale synthetic biology.

Barrett CL, Kim TY, Kim HU, Palsson BØ, Lee SY. Barrett CL, et al. Among authors: palsson bo. Curr Opin Biotechnol. 2006 Oct;17(5):488-92. doi: 10.1016/j.copbio.2006.08.001. Epub 2006 Aug 23. Curr Opin Biotechnol. 2006. PMID: 16934450 Review.

8

Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts.

Cho BK, Knight EM, Barrett CL, Palsson BØ. Cho BK, et al. Among authors: palsson bo. Genome Res. 2008 Jun;18(6):900-10. doi: 10.1101/gr.070276.107. Epub 2008 Mar 13. Genome Res. 2008. PMID: 18340041 Free PMC article.

9

Genome-scale reconstruction of the Lrp regulatory network in Escherichia coli.

Cho BK, Barrett CL, Knight EM, Park YS, Palsson BØ. Cho BK, et al. Among authors: palsson bo. Proc Natl Acad Sci U S A. 2008 Dec 9;105(49):19462-7. doi: 10.1073/pnas.0807227105. Epub 2008 Dec 3. Proc Natl Acad Sci U S A. 2008. PMID: 19052235 Free PMC article.

10

Reconstruction of biochemical networks in microorganisms.

Feist AM, Herrgård MJ, Thiele I, Reed JL, Palsson BØ. Feist AM, et al. Among authors: palsson bo. Nat Rev Microbiol. 2009 Feb;7(2):129-43. doi: 10.1038/nrmicro1949. Epub 2008 Dec 31. Nat Rev Microbiol. 2009. PMID: 19116616 Free PMC article. Review.

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