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Assembly of large genomes using second-generation sequencing.
Schatz MC, Delcher AL, Salzberg SL. Schatz MC, et al. Among authors: salzberg sl. Genome Res. 2010 Sep;20(9):1165-73. doi: 10.1101/gr.101360.109. Epub 2010 May 27. Genome Res. 2010. PMID: 20508146 Free PMC article.
Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.
Bogdanove AJ, Koebnik R, Lu H, Furutani A, Angiuoli SV, Patil PB, Van Sluys MA, Ryan RP, Meyer DF, Han SW, Aparna G, Rajaram M, Delcher AL, Phillippy AM, Puiu D, Schatz MC, Shumway M, Sommer DD, Trapnell C, Benahmed F, Dimitrov G, Madupu R, Radune D, Sullivan S, Jha G, Ishihara H, Lee SW, Pandey A, Sharma V, Sriariyanun M, Szurek B, Vera-Cruz CM, Dorman KS, Ronald PC, Verdier V, Dow JM, Sonti RV, Tsuge S, Brendel VP, Rabinowicz PD, Leach JE, White FF, Salzberg SL. Bogdanove AJ, et al. Among authors: salzberg sl. J Bacteriol. 2011 Oct;193(19):5450-64. doi: 10.1128/JB.05262-11. Epub 2011 Jul 22. J Bacteriol. 2011. PMID: 21784931 Free PMC article.
Comparative genome assembly.
Pop M, Phillippy A, Delcher AL, Salzberg SL. Pop M, et al. Among authors: salzberg sl. Brief Bioinform. 2004 Sep;5(3):237-48. doi: 10.1093/bib/5.3.237. Brief Bioinform. 2004. PMID: 15383210
Identifying bacterial genes and endosymbiont DNA with Glimmer.
Delcher AL, Bratke KA, Powers EC, Salzberg SL. Delcher AL, et al. Among authors: salzberg sl. Bioinformatics. 2007 Mar 15;23(6):673-9. doi: 10.1093/bioinformatics/btm009. Epub 2007 Jan 19. Bioinformatics. 2007. PMID: 17237039 Free PMC article.
Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains.
Fleischmann RD, Alland D, Eisen JA, Carpenter L, White O, Peterson J, DeBoy R, Dodson R, Gwinn M, Haft D, Hickey E, Kolonay JF, Nelson WC, Umayam LA, Ermolaeva M, Salzberg SL, Delcher A, Utterback T, Weidman J, Khouri H, Gill J, Mikula A, Bishai W, Jacobs WR Jr, Venter JC, Fraser CM. Fleischmann RD, et al. Among authors: salzberg sl. J Bacteriol. 2002 Oct;184(19):5479-90. doi: 10.1128/JB.184.19.5479-5490.2002. J Bacteriol. 2002. PMID: 12218036 Free PMC article.
Correction: Serendipitous discovery of Wolbachia genomes in multiple Drosophila species.
Salzberg SL, Dunning Hotopp JC, Delcher AL, Pop M, Smith DR, Eisen MB, Nelson WC. Salzberg SL, et al. Genome Biol. 2005;6(7):402. doi: 10.1186/gb-2005-6-7-402. Epub 2005 Jun 24. Genome Biol. 2005. PMID: 15998463 Free PMC article.
A correction to Serendipitous discovery of Wolbachia genomes in multiple Drosophila species by SL Salzberg, JC Dunning Hotopp, AL Delcher, M Pop, DR Smith, MB Eisen and WC Nelson. ...
A correction to Serendipitous discovery of Wolbachia genomes in multiple Drosophila species by SL Salzberg, JC Dunning Hotopp, …
Minimus: a fast, lightweight genome assembler.
Sommer DD, Delcher AL, Salzberg SL, Pop M. Sommer DD, et al. Among authors: salzberg sl. BMC Bioinformatics. 2007 Feb 26;8:64. doi: 10.1186/1471-2105-8-64. BMC Bioinformatics. 2007. PMID: 17324286 Free PMC article.
402 results