Dunbrack RL - Search Results

1

Structural profiling of endogenous S-nitrosocysteine residues reveals unique features that accommodate diverse mechanisms for protein S-nitrosylation.

Doulias PT, Greene JL, Greco TM, Tenopoulou M, Seeholzer SH, Dunbrack RL, Ischiropoulos H. Doulias PT, et al. Among authors: dunbrack rl. Proc Natl Acad Sci U S A. 2010 Sep 28;107(39):16958-63. doi: 10.1073/pnas.1008036107. Epub 2010 Sep 13. Proc Natl Acad Sci U S A. 2010. PMID: 20837516 Free PMC article.

2

Unique properties of the large antigen of hepatitis delta virus.

Moraleda G, Seeholzer S, Bichko V, Dunbrack R, Otto J, Taylor J. Moraleda G, et al. J Virol. 1999 Sep;73(9):7147-52. doi: 10.1128/JVI.73.9.7147-7152.1999. J Virol. 1999. PMID: 10438801 Free PMC article.

3

Role of a selecting ligand in shaping the murine γδ-TCR repertoire.

Fahl SP, Coffey F, Kain L, Zarin P, Dunbrack RL Jr, Teyton L, Zúñiga-Pflücker JC, Kappes DJ, Wiest DL. Fahl SP, et al. Among authors: dunbrack rl jr. Proc Natl Acad Sci U S A. 2018 Feb 20;115(8):1889-1894. doi: 10.1073/pnas.1718328115. Epub 2018 Feb 5. Proc Natl Acad Sci U S A. 2018. PMID: 29432160 Free PMC article.

4

Defining a new nomenclature for the structures of active and inactive kinases.

Modi V, Dunbrack RL Jr. Modi V, et al. Among authors: dunbrack rl jr. Proc Natl Acad Sci U S A. 2019 Apr 2;116(14):6818-6827. doi: 10.1073/pnas.1814279116. Epub 2019 Mar 13. Proc Natl Acad Sci U S A. 2019. PMID: 30867294 Free PMC article.

5

The protein common interface database (ProtCID)--a comprehensive database of interactions of homologous proteins in multiple crystal forms.

Xu Q, Dunbrack RL Jr. Xu Q, et al. Among authors: dunbrack rl jr. Nucleic Acids Res. 2011 Jan;39(Database issue):D761-70. doi: 10.1093/nar/gkq1059. Epub 2010 Oct 29. Nucleic Acids Res. 2011. PMID: 21036862 Free PMC article.

6

Nonplanar peptide bonds in proteins are common and conserved but not biased toward active sites.

Berkholz DS, Driggers CM, Shapovalov MV, Dunbrack RL Jr, Karplus PA. Berkholz DS, et al. Among authors: dunbrack rl jr. Proc Natl Acad Sci U S A. 2012 Jan 10;109(2):449-53. doi: 10.1073/pnas.1107115108. Epub 2011 Dec 23. Proc Natl Acad Sci U S A. 2012. PMID: 22198840 Free PMC article.

7

Charge asymmetry in the proteins of the outer membrane.

Slusky JS, Dunbrack RL Jr. Slusky JS, et al. Among authors: dunbrack rl jr. Bioinformatics. 2013 Sep 1;29(17):2122-8. doi: 10.1093/bioinformatics/btt355. Epub 2013 Jun 19. Bioinformatics. 2013. PMID: 23782617 Free PMC article.

8

BioAssemblyModeler (BAM): user-friendly homology modeling of protein homo- and heterooligomers.

Shapovalov MV, Wang Q, Xu Q, Andrake M, Dunbrack RL Jr. Shapovalov MV, et al. Among authors: dunbrack rl jr. PLoS One. 2014 Jun 12;9(6):e98309. doi: 10.1371/journal.pone.0098309. eCollection 2014. PLoS One. 2014. PMID: 24922057 Free PMC article.

9

Conformational analysis of the DFG-out kinase motif and biochemical profiling of structurally validated type II inhibitors.

Vijayan RS, He P, Modi V, Duong-Ly KC, Ma H, Peterson JR, Dunbrack RL Jr, Levy RM. Vijayan RS, et al. Among authors: dunbrack rl jr. J Med Chem. 2015 Jan 8;58(1):466-79. doi: 10.1021/jm501603h. Epub 2014 Dec 12. J Med Chem. 2015. PMID: 25478866 Free PMC article.

10

Development of a rotamer library for use in beta-peptide foldamer computational design.

Shandler SJ, Shapovalov MV, Dunbrack RL Jr, DeGrado WF. Shandler SJ, et al. Among authors: dunbrack rl jr. J Am Chem Soc. 2010 Jun 2;132(21):7312-20. doi: 10.1021/ja906700x. J Am Chem Soc. 2010. PMID: 20446685 Free PMC article.

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