Qian X - Search Results

1

State reduction for network intervention in probabilistic Boolean networks.

Qian X, Ghaffari N, Ivanov I, Dougherty ER. Qian X, et al. Bioinformatics. 2010 Dec 15;26(24):3098-104. doi: 10.1093/bioinformatics/btq575. Epub 2010 Oct 17. Bioinformatics. 2010. PMID: 20956246 Free PMC article.

2

On the long-run sensitivity of probabilistic Boolean networks.

Qian X, Dougherty ER. Qian X, et al. J Theor Biol. 2009 Apr 21;257(4):560-77. doi: 10.1016/j.jtbi.2008.12.023. Epub 2008 Dec 31. J Theor Biol. 2009. PMID: 19168076 Free PMC article.

3

Intervention in gene regulatory networks via greedy control policies based on long-run behavior.

Qian X, Ivanov I, Ghaffari N, Dougherty ER. Qian X, et al. BMC Syst Biol. 2009 Jun 15;3:61. doi: 10.1186/1752-0509-3-61. BMC Syst Biol. 2009. PMID: 19527511 Free PMC article.

4

Effective identification of conserved pathways in biological networks using hidden Markov models.

Qian X, Yoon BJ. Qian X, et al. PLoS One. 2009 Dec 7;4(12):e8070. doi: 10.1371/journal.pone.0008070. PLoS One. 2009. PMID: 19997609 Free PMC article.

5

A CoD-based reduction algorithm for designing stationary control policies on Boolean networks.

Ghaffari N, Ivanov I, Qian X, Dougherty ER. Ghaffari N, et al. Among authors: qian x. Bioinformatics. 2010 Jun 15;26(12):1556-63. doi: 10.1093/bioinformatics/btq225. Epub 2010 Apr 25. Bioinformatics. 2010. PMID: 20421196

6

Comparative analysis of protein interaction networks reveals that conserved pathways are susceptible to HIV-1 interception.

Qian X, Yoon BJ. Qian X, et al. BMC Bioinformatics. 2011 Feb 15;12 Suppl 1(Suppl 1):S19. doi: 10.1186/1471-2105-12-S1-S19. BMC Bioinformatics. 2011. PMID: 21342548 Free PMC article.

7

Intervention in gene regulatory networks via phenotypically constrained control policies based on long-run behavior.

Qian X, Dougherty ER. Qian X, et al. IEEE/ACM Trans Comput Biol Bioinform. 2012 Jan-Feb;9(1):123-36. doi: 10.1109/TCBB.2011.107. Epub 2011 Jul 20. IEEE/ACM Trans Comput Biol Bioinform. 2012. PMID: 21788674

8

Enhancing the accuracy of HMM-based conserved pathway prediction using global correspondence scores.

Qian X, Sahraeian SM, Yoon BJ. Qian X, et al. BMC Bioinformatics. 2011 Oct 18;12 Suppl 10(Suppl 10):S6. doi: 10.1186/1471-2105-12-S10-S6. BMC Bioinformatics. 2011. PMID: 22165903 Free PMC article.

9

A CoD-based stationary control policy for intervening in large gene regulatory networks.

Ghaffari N, Ivanov I, Qian X, Dougherty ER. Ghaffari N, et al. Among authors: qian x. BMC Bioinformatics. 2011 Oct 18;12 Suppl 10(Suppl 10):S10. doi: 10.1186/1471-2105-12-S10-S10. BMC Bioinformatics. 2011. PMID: 22165980 Free PMC article.

10

Adaptive bi-level programming for optimal gene knockouts for targeted overproduction under phenotypic constraints.

Ren S, Zeng B, Qian X. Ren S, et al. Among authors: qian x. BMC Bioinformatics. 2013;14 Suppl 2(Suppl 2):S17. doi: 10.1186/1471-2105-14-S2-S17. Epub 2013 Jan 21. BMC Bioinformatics. 2013. PMID: 23368729 Free PMC article.

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