Gerber GK - Search Results

1

Discovering homotypic binding events at high spatial resolution.

Guo Y, Papachristoudis G, Altshuler RC, Gerber GK, Jaakkola TS, Gifford DK, Mahony S. Guo Y, et al. Among authors: gerber gk. Bioinformatics. 2010 Dec 15;26(24):3028-34. doi: 10.1093/bioinformatics/btq590. Epub 2010 Oct 21. Bioinformatics. 2010. PMID: 20966006 Free PMC article.

2

Transcriptional regulatory networks in Saccharomyces cerevisiae.

Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I, Zeitlinger J, Jennings EG, Murray HL, Gordon DB, Ren B, Wyrick JJ, Tagne JB, Volkert TL, Fraenkel E, Gifford DK, Young RA. Lee TI, et al. Among authors: gerber gk. Science. 2002 Oct 25;298(5594):799-804. doi: 10.1126/science.1075090. Science. 2002. PMID: 12399584

3

Comparing the continuous representation of time-series expression profiles to identify differentially expressed genes.

Bar-Joseph Z, Gerber G, Simon I, Gifford DK, Jaakkola TS. Bar-Joseph Z, et al. Proc Natl Acad Sci U S A. 2003 Sep 2;100(18):10146-51. doi: 10.1073/pnas.1732547100. Epub 2003 Aug 21. Proc Natl Acad Sci U S A. 2003. PMID: 12934016 Free PMC article.

4

Continuous representations of time-series gene expression data.

Bar-Joseph Z, Gerber GK, Gifford DK, Jaakkola TS, Simon I. Bar-Joseph Z, et al. Among authors: gerber gk. J Comput Biol. 2003;10(3-4):341-56. doi: 10.1089/10665270360688057. J Comput Biol. 2003. PMID: 12935332

5

Computational discovery of gene modules and regulatory networks.

Bar-Joseph Z, Gerber GK, Lee TI, Rinaldi NJ, Yoo JY, Robert F, Gordon DB, Fraenkel E, Jaakkola TS, Young RA, Gifford DK. Bar-Joseph Z, et al. Among authors: gerber gk. Nat Biotechnol. 2003 Nov;21(11):1337-42. doi: 10.1038/nbt890. Epub 2003 Oct 12. Nat Biotechnol. 2003. PMID: 14555958 Free article.

6

Coordinated binding of NF-kappaB family members in the response of human cells to lipopolysaccharide.

Schreiber J, Jenner RG, Murray HL, Gerber GK, Gifford DK, Young RA. Schreiber J, et al. Among authors: gerber gk. Proc Natl Acad Sci U S A. 2006 Apr 11;103(15):5899-904. doi: 10.1073/pnas.0510996103. Epub 2006 Apr 4. Proc Natl Acad Sci U S A. 2006. PMID: 16595631 Free PMC article.

7

High-resolution computational models of genome binding events.

Qi Y, Rolfe A, MacIsaac KD, Gerber GK, Pokholok D, Zeitlinger J, Danford T, Dowell RD, Fraenkel E, Jaakkola TS, Young RA, Gifford DK. Qi Y, et al. Among authors: gerber gk. Nat Biotechnol. 2006 Aug;24(8):963-70. doi: 10.1038/nbt1233. Nat Biotechnol. 2006. PMID: 16900145

8

Automated discovery of functional generality of human gene expression programs.

Gerber GK, Dowell RD, Jaakkola TS, Gifford DK. Gerber GK, et al. PLoS Comput Biol. 2007 Aug;3(8):e148. doi: 10.1371/journal.pcbi.0030148. Epub 2007 Jun 13. PLoS Comput Biol. 2007. PMID: 17696603 Free PMC article.

9

Inferring dynamic signatures of microbes in complex host ecosystems.

Gerber GK, Onderdonk AB, Bry L. Gerber GK, et al. PLoS Comput Biol. 2012;8(8):e1002624. doi: 10.1371/journal.pcbi.1002624. Epub 2012 Aug 2. PLoS Comput Biol. 2012. PMID: 22876171 Free PMC article.

10

Engineered bacteria can function in the mammalian gut long-term as live diagnostics of inflammation.

Riglar DT, Giessen TW, Baym M, Kerns SJ, Niederhuber MJ, Bronson RT, Kotula JW, Gerber GK, Way JC, Silver PA. Riglar DT, et al. Among authors: gerber gk. Nat Biotechnol. 2017 Jul;35(7):653-658. doi: 10.1038/nbt.3879. Epub 2017 May 29. Nat Biotechnol. 2017. PMID: 28553941 Free PMC article.

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