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SAMStat: monitoring biases in next generation sequencing data.
Lassmann T, Hayashizaki Y, Daub CO. Lassmann T, et al. Among authors: hayashizaki y. Bioinformatics. 2011 Jan 1;27(1):130-1. doi: 10.1093/bioinformatics/btq614. Epub 2010 Nov 18. Bioinformatics. 2011. PMID: 21088025 Free PMC article.
Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries.
de Hoon MJ, Taft RJ, Hashimoto T, Kanamori-Katayama M, Kawaji H, Kawano M, Kishima M, Lassmann T, Faulkner GJ, Mattick JS, Daub CO, Carninci P, Kawai J, Suzuki H, Hayashizaki Y. de Hoon MJ, et al. Among authors: hayashizaki y. Genome Res. 2010 Feb;20(2):257-64. doi: 10.1101/gr.095273.109. Epub 2010 Jan 5. Genome Res. 2010. PMID: 20051556 Free PMC article.
MOIRAI: a compact workflow system for CAGE analysis.
Hasegawa A, Daub C, Carninci P, Hayashizaki Y, Lassmann T. Hasegawa A, et al. Among authors: hayashizaki y. BMC Bioinformatics. 2014 May 16;15:144. doi: 10.1186/1471-2105-15-144. BMC Bioinformatics. 2014. PMID: 24884663 Free PMC article.
FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions.
Severin J, Waterhouse AM, Kawaji H, Lassmann T, van Nimwegen E, Balwierz PJ, de Hoon MJ, Hume DA, Carninci P, Hayashizaki Y, Suzuki H, Daub CO, Forrest AR. Severin J, et al. Among authors: hayashizaki y. Genome Biol. 2009;10(4):R39. doi: 10.1186/gb-2009-10-4-r39. Epub 2009 Apr 19. Genome Biol. 2009. PMID: 19374773 Free PMC article.
Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan.
Plessy C, Bertin N, Takahashi H, Simone R, Salimullah M, Lassmann T, Vitezic M, Severin J, Olivarius S, Lazarevic D, Hornig N, Orlando V, Bell I, Gao H, Dumais J, Kapranov P, Wang H, Davis CA, Gingeras TR, Kawai J, Daub CO, Hayashizaki Y, Gustincich S, Carninci P. Plessy C, et al. Among authors: hayashizaki y. Nat Methods. 2010 Jul;7(7):528-34. doi: 10.1038/nmeth.1470. Epub 2010 Jun 13. Nat Methods. 2010. PMID: 20543846 Free PMC article.
Optimization of turn-back primers in isothermal amplification.
Kimura Y, de Hoon MJ, Aoki S, Ishizu Y, Kawai Y, Kogo Y, Daub CO, Lezhava A, Arner E, Hayashizaki Y. Kimura Y, et al. Among authors: hayashizaki y. Nucleic Acids Res. 2011 May;39(9):e59. doi: 10.1093/nar/gkr041. Epub 2011 Feb 9. Nucleic Acids Res. 2011. PMID: 21310714 Free PMC article.
645 results