Morra G - Search Results

1

Investigating dynamic and energetic determinants of protein nucleic acid recognition: analysis of the zinc finger zif268-DNA complexes.

Torella R, Moroni E, Caselle M, Morra G, Colombo G. Torella R, et al. Among authors: morra g. BMC Struct Biol. 2010 Nov 24;10:42. doi: 10.1186/1472-6807-10-42. BMC Struct Biol. 2010. PMID: 21106075 Free PMC article.

2

Relationship between energy distribution and fold stability: Insights from molecular dynamics simulations of native and mutant proteins.

Morra G, Colombo G. Morra G, et al. Proteins. 2008 Aug;72(2):660-72. doi: 10.1002/prot.21963. Proteins. 2008. PMID: 18247351

3

Investigating the mechanism of peptide aggregation: insights from mixed monte carlo-molecular dynamics simulations.

Meli M, Morra G, Colombo G. Meli M, et al. Among authors: morra g. Biophys J. 2008 Jun;94(11):4414-26. doi: 10.1529/biophysj.107.121061. Epub 2008 Feb 8. Biophys J. 2008. PMID: 18263661 Free PMC article.

4

Molecular dynamics simulations of proteins and peptides: from folding to drug design.

Morra G, Meli M, Colombo G. Morra G, et al. Curr Protein Pept Sci. 2008 Apr;9(2):181-96. doi: 10.2174/138920308783955234. Curr Protein Pept Sci. 2008. PMID: 18393887 Review.

5

Understanding ligand-based modulation of the Hsp90 molecular chaperone dynamics at atomic resolution.

Colombo G, Morra G, Meli M, Verkhivker G. Colombo G, et al. Among authors: morra g. Proc Natl Acad Sci U S A. 2008 Jun 10;105(23):7976-81. doi: 10.1073/pnas.0802879105. Epub 2008 May 29. Proc Natl Acad Sci U S A. 2008. PMID: 18511558 Free PMC article.

6

A molecular dynamics study of the interaction of D-peptide amyloid inhibitors with their target sequence reveals a potential inhibitory pharmacophore conformation.

Esteras-Chopo A, Morra G, Moroni E, Serrano L, Lopez de la Paz M, Colombo G. Esteras-Chopo A, et al. Among authors: morra g. J Mol Biol. 2008 Oct 31;383(1):266-80. doi: 10.1016/j.jmb.2008.07.076. Epub 2008 Jul 31. J Mol Biol. 2008. PMID: 18703072

7

Methionine sulfoxides on prion protein Helix-3 switch on the alpha-fold destabilization required for conversion.

Colombo G, Meli M, Morra G, Gabizon R, Gasset M. Colombo G, et al. Among authors: morra g. PLoS One. 2009;4(1):e4296. doi: 10.1371/journal.pone.0004296. Epub 2009 Jan 27. PLoS One. 2009. PMID: 19172188 Free PMC article.

8

Modeling signal propagation mechanisms and ligand-based conformational dynamics of the Hsp90 molecular chaperone full-length dimer.

Morra G, Verkhivker G, Colombo G. Morra G, et al. PLoS Comput Biol. 2009 Mar;5(3):e1000323. doi: 10.1371/journal.pcbi.1000323. Epub 2009 Mar 20. PLoS Comput Biol. 2009. PMID: 19300478 Free PMC article.

9

Structural and computational biology of the molecular chaperone Hsp90: from understanding molecular mechanisms to computer-based inhibitor design.

Verkhivker GM, Dixit A, Morra G, Colombo G. Verkhivker GM, et al. Among authors: morra g. Curr Top Med Chem. 2009;9(15):1369-85. doi: 10.2174/156802609789895700. Curr Top Med Chem. 2009. PMID: 19860735 Review.

10

Selecting sequences that fold into a defined 3D structure: A new approach for protein design based on molecular dynamics and energetics.

Morra G, Baragli C, Colombo G. Morra G, et al. Biophys Chem. 2010 Feb;146(2-3):76-84. doi: 10.1016/j.bpc.2009.10.007. Epub 2009 Oct 31. Biophys Chem. 2010. PMID: 19926206

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