Bockmayr A - Search Results

1

Exploring metabolic pathways in genome-scale networks via generating flux modes.

Rezola A, de Figueiredo LF, Brock M, Pey J, Podhorski A, Wittmann C, Schuster S, Bockmayr A, Planes FJ. Rezola A, et al. Among authors: bockmayr a. Bioinformatics. 2011 Feb 15;27(4):534-40. doi: 10.1093/bioinformatics/btq681. Epub 2010 Dec 10. Bioinformatics. 2011. PMID: 21149278

2

FFCA: a feasibility-based method for flux coupling analysis of metabolic networks.

David L, Marashi SA, Larhlimi A, Mieth B, Bockmayr A. David L, et al. Among authors: bockmayr a. BMC Bioinformatics. 2011 Jun 15;12:236. doi: 10.1186/1471-2105-12-236. BMC Bioinformatics. 2011. PMID: 21676263 Free PMC article.

3

F2C2: a fast tool for the computation of flux coupling in genome-scale metabolic networks.

Larhlimi A, David L, Selbig J, Bockmayr A. Larhlimi A, et al. Among authors: bockmayr a. BMC Bioinformatics. 2012 Apr 23;13:57. doi: 10.1186/1471-2105-13-57. BMC Bioinformatics. 2012. PMID: 22524245 Free PMC article.

4

Fast thermodynamically constrained flux variability analysis.

Müller AC, Bockmayr A. Müller AC, et al. Among authors: bockmayr a. Bioinformatics. 2013 Apr 1;29(7):903-9. doi: 10.1093/bioinformatics/btt059. Epub 2013 Feb 6. Bioinformatics. 2013. PMID: 23390138

5

A mixed-integer linear programming approach to the reduction of genome-scale metabolic networks.

Röhl A, Bockmayr A. Röhl A, et al. Among authors: bockmayr a. BMC Bioinformatics. 2017 Jan 3;18(1):2. doi: 10.1186/s12859-016-1412-z. BMC Bioinformatics. 2017. PMID: 28049424 Free PMC article.

6

Computing irreversible minimal cut sets in genome-scale metabolic networks via flux cone projection.

Röhl A, Riou T, Bockmayr A. Röhl A, et al. Among authors: bockmayr a. Bioinformatics. 2019 Aug 1;35(15):2618-2625. doi: 10.1093/bioinformatics/bty1027. Bioinformatics. 2019. PMID: 30590390

7

Flux coupling analysis of metabolic networks is sensitive to missing reactions.

Marashi SA, Bockmayr A. Marashi SA, et al. Among authors: bockmayr a. Biosystems. 2011 Jan;103(1):57-66. doi: 10.1016/j.biosystems.2010.09.011. Epub 2010 Oct 1. Biosystems. 2011. PMID: 20888889

8

On flux coupling analysis of metabolic subsystems.

Marashi SA, David L, Bockmayr A. Marashi SA, et al. Among authors: bockmayr a. J Theor Biol. 2012 Jun 7;302:62-9. doi: 10.1016/j.jtbi.2012.02.023. Epub 2012 Mar 3. J Theor Biol. 2012. PMID: 22406036

9

Flux modules in metabolic networks.

Müller AC, Bockmayr A. Müller AC, et al. Among authors: bockmayr a. J Math Biol. 2014 Nov;69(5):1151-79. doi: 10.1007/s00285-013-0731-1. Epub 2013 Oct 19. J Math Biol. 2014. PMID: 24141488

10

Dynamic optimization of metabolic networks coupled with gene expression.

Waldherr S, Oyarzún DA, Bockmayr A. Waldherr S, et al. Among authors: bockmayr a. J Theor Biol. 2015 Jan 21;365:469-85. doi: 10.1016/j.jtbi.2014.10.035. Epub 2014 Nov 6. J Theor Biol. 2015. PMID: 25451533 Free article.

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