Liu Y - Search Results

1

Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research.

Camerlengo T, Ozer HG, Yan P, Parvin J, Huang T, Huang K, Perez F, Teng M, Li L, Liu Y, Kurc T. Camerlengo T, et al. Among authors: liu y. Proceedings (IEEE Int Conf Bioinformatics Biomed). 2009 Nov 1;1-4(Nov 2009):392-395. doi: 10.1109/BIBM.2009.84. Proceedings (IEEE Int Conf Bioinformatics Biomed). 2009. PMID: 21151835 Free PMC article.

2

A Poisson mixture model to identify changes in RNA polymerase II binding quantity using high-throughput sequencing technology.

Feng W, Liu Y, Wu J, Nephew KP, Huang TH, Li L. Feng W, et al. Among authors: liu y. BMC Genomics. 2008 Sep 16;9 Suppl 2(Suppl 2):S23. doi: 10.1186/1471-2164-9-S2-S23. BMC Genomics. 2008. PMID: 18831789 Free PMC article.

3

Signal transducers and activators of transcription-1 (STAT1) regulates microRNA transcription in interferon gamma-stimulated HeLa cells.

Wang G, Wang Y, Teng M, Zhang D, Li L, Liu Y. Wang G, et al. Among authors: liu y. PLoS One. 2010 Jul 26;5(7):e11794. doi: 10.1371/journal.pone.0011794. PLoS One. 2010. PMID: 20668688 Free PMC article.

4

RNA polymerase II binding patterns reveal genomic regions involved in microRNA gene regulation.

Wang G, Wang Y, Shen C, Huang YW, Huang K, Huang TH, Nephew KP, Li L, Liu Y. Wang G, et al. Among authors: liu y. PLoS One. 2010 Nov 2;5(11):e13798. doi: 10.1371/journal.pone.0013798. PLoS One. 2010. PMID: 21072189 Free PMC article.

5

An empirical Bayes model for gene expression and methylation profiles in antiestrogen resistant breast cancer.

Jeong J, Li L, Liu Y, Nephew KP, Huang TH, Shen C. Jeong J, et al. Among authors: liu y. BMC Med Genomics. 2010 Nov 25;3:55. doi: 10.1186/1755-8794-3-55. BMC Med Genomics. 2010. PMID: 21108837 Free PMC article.

6

A modulated empirical Bayes model for identifying topological and temporal estrogen receptor α regulatory networks in breast cancer.

Shen C, Huang Y, Liu Y, Wang G, Zhao Y, Wang Z, Teng M, Wang Y, Flockhart DA, Skaar TC, Yan P, Nephew KP, Huang TH, Li L. Shen C, et al. Among authors: liu y. BMC Syst Biol. 2011 May 9;5:67. doi: 10.1186/1752-0509-5-67. BMC Syst Biol. 2011. PMID: 21554733 Free PMC article.

7

The influence of cis-regulatory elements on DNA methylation fidelity.

Teng M, Balch C, Liu Y, Li M, Huang TH, Wang Y, Nephew KP, Li L. Teng M, et al. Among authors: liu y. PLoS One. 2012;7(3):e32928. doi: 10.1371/journal.pone.0032928. Epub 2012 Mar 6. PLoS One. 2012. PMID: 22412954 Free PMC article.

8

Empirical bayes model comparisons for differential methylation analysis.

Teng M, Wang Y, Kim S, Li L, Shen C, Wang G, Liu Y, Huang TH, Nephew KP, Balch C. Teng M, et al. Among authors: liu y. Comp Funct Genomics. 2012;2012:376706. doi: 10.1155/2012/376706. Epub 2012 Aug 22. Comp Funct Genomics. 2012. PMID: 22956892 Free PMC article.

9

A modulator based regulatory network for ERα signaling pathway.

Wu HY, Zheng P, Jiang G, Liu Y, Nephew KP, Huang TH, Li L. Wu HY, et al. Among authors: liu y. BMC Genomics. 2012;13 Suppl 6(Suppl 6):S6. doi: 10.1186/1471-2164-13-S6-S6. Epub 2012 Oct 26. BMC Genomics. 2012. PMID: 23134758 Free PMC article.

10

A dynamic time order network for time-series gene expression data analysis.

Zhang P, Mourad R, Xiang Y, Huang K, Huang T, Nephew K, Liu Y, Li L. Zhang P, et al. Among authors: liu y. BMC Syst Biol. 2012;6 Suppl 3(Suppl 3):S9. doi: 10.1186/1752-0509-6-S3-S9. Epub 2012 Dec 17. BMC Syst Biol. 2012. PMID: 23281615 Free PMC article.

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