Pupko T - Search Results

1

Phosphatidylserine increases IKBKAP levels in familial dysautonomia cells.

Keren H, Donyo M, Zeevi D, Maayan C, Pupko T, Ast G. Keren H, et al. Among authors: pupko t. PLoS One. 2010 Dec 29;5(12):e15884. doi: 10.1371/journal.pone.0015884. PLoS One. 2010. PMID: 21209961 Free PMC article.

2

Genetic and Functional Diversity Help Explain Pathogenic, Weakly Pathogenic, and Commensal Lifestyles in the Genus Xanthomonas.

Pena MM, Bhandari R, Bowers RM, Weis K, Newberry E, Wagner N, Pupko T, Jones JB, Woyke T, Vinatzer BA, Jacques MA, Potnis N. Pena MM, et al. Among authors: pupko t. Genome Biol Evol. 2024 Apr 2;16(4):evae074. doi: 10.1093/gbe/evae074. Genome Biol Evol. 2024. PMID: 38648506 Free PMC article.

3

Insertions and Deletions: Computational Methods, Evolutionary Dynamics, and Biological Applications.

Redelings BD, Holmes I, Lunter G, Pupko T, Anisimova M. Redelings BD, et al. Among authors: pupko t. Mol Biol Evol. 2024 Sep 4;41(9):msae177. doi: 10.1093/molbev/msae177. Mol Biol Evol. 2024. PMID: 39172750 Free PMC article. Review.

4

Evolutionary Insights from the Mitochondrial Genome of Oikopleura dioica: Sequencing Challenges, RNA Editing, Gene Transfers to the Nucleus, and tRNA Loss.

Klirs Y, Novosolov M, Gissi C, Garić R, Pupko T, Stach T, Huchon D. Klirs Y, et al. Among authors: pupko t. Genome Biol Evol. 2024 Sep 3;16(9):evae181. doi: 10.1093/gbe/evae181. Genome Biol Evol. 2024. PMID: 39162337 Free PMC article.

5

Complete genome sequence of an Israeli isolate of Xanthomonas hortorum pv. pelargonii strain 305 and novel type III effectors identified in Xanthomonas.

Wagner N, Ben-Meir D, Teper D, Pupko T. Wagner N, et al. Among authors: pupko t. Front Plant Sci. 2023 Jun 2;14:1155341. doi: 10.3389/fpls.2023.1155341. eCollection 2023. Front Plant Sci. 2023. PMID: 37332699 Free PMC article.

6

Comparative analysis identifies exonic splicing regulatory sequences--The complex definition of enhancers and silencers.

Goren A, Ram O, Amit M, Keren H, Lev-Maor G, Vig I, Pupko T, Ast G. Goren A, et al. Among authors: pupko t. Mol Cell. 2006 Jun 23;22(6):769-781. doi: 10.1016/j.molcel.2006.05.008. Mol Cell. 2006. PMID: 16793546 Free article.

7

The "alternative" choice of constitutive exons throughout evolution.

Lev-Maor G, Goren A, Sela N, Kim E, Keren H, Doron-Faigenboim A, Leibman-Barak S, Pupko T, Ast G. Lev-Maor G, et al. Among authors: pupko t. PLoS Genet. 2007 Nov;3(11):e203. doi: 10.1371/journal.pgen.0030203. PLoS Genet. 2007. PMID: 18020709 Free PMC article.

8

Large-scale comparative analysis of splicing signals and their corresponding splicing factors in eukaryotes.

Schwartz SH, Silva J, Burstein D, Pupko T, Eyras E, Ast G. Schwartz SH, et al. Among authors: pupko t. Genome Res. 2008 Jan;18(1):88-103. doi: 10.1101/gr.6818908. Epub 2007 Nov 21. Genome Res. 2008. PMID: 18032728 Free PMC article.

9

Transduplication resulted in the incorporation of two protein-coding sequences into the turmoil-1 transposable element of C. elegans.

Sela N, Stern A, Makalowski W, Pupko T, Ast G. Sela N, et al. Among authors: pupko t. Biol Direct. 2008 Oct 8;3:41. doi: 10.1186/1745-6150-3-41. Biol Direct. 2008. PMID: 18842128 Free PMC article.

10

The operonic location of auto-transcriptional repressors is highly conserved in bacteria.

Rubinstein ND, Zeevi D, Oren Y, Segal G, Pupko T. Rubinstein ND, et al. Among authors: pupko t. Mol Biol Evol. 2011 Dec;28(12):3309-18. doi: 10.1093/molbev/msr163. Epub 2011 Jun 20. Mol Biol Evol. 2011. PMID: 21690561

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