Adkins JN - Search Results

1

A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2.

Thiele I, Hyduke DR, Steeb B, Fankam G, Allen DK, Bazzani S, Charusanti P, Chen FC, Fleming RM, Hsiung CA, De Keersmaecker SC, Liao YC, Marchal K, Mo ML, Özdemir E, Raghunathan A, Reed JL, Shin SI, Sigurbjörnsdóttir S, Steinmann J, Sudarsan S, Swainston N, Thijs IM, Zengler K, Palsson BO, Adkins JN, Bumann D. Thiele I, et al. Among authors: adkins jn. BMC Syst Biol. 2011 Jan 18;5:8. doi: 10.1186/1752-0509-5-8. BMC Syst Biol. 2011. PMID: 21244678 Free PMC article.

2

An experimentally-supported genome-scale metabolic network reconstruction for Yersinia pestis CO92.

Charusanti P, Chauhan S, McAteer K, Lerman JA, Hyduke DR, Motin VL, Ansong C, Adkins JN, Palsson BO. Charusanti P, et al. Among authors: adkins jn. BMC Syst Biol. 2011 Oct 13;5:163. doi: 10.1186/1752-0509-5-163. BMC Syst Biol. 2011. PMID: 21995956 Free PMC article.

3

Model-driven multi-omic data analysis elucidates metabolic immunomodulators of macrophage activation.

Bordbar A, Mo ML, Nakayasu ES, Schrimpe-Rutledge AC, Kim YM, Metz TO, Jones MB, Frank BC, Smith RD, Peterson SN, Hyduke DR, Adkins JN, Palsson BO. Bordbar A, et al. Among authors: adkins jn. Mol Syst Biol. 2012 Jun 26;8:558. doi: 10.1038/msb.2012.21. Mol Syst Biol. 2012. PMID: 22735334 Free PMC article.

4

Omic data from evolved E. coli are consistent with computed optimal growth from genome-scale models.

Lewis NE, Hixson KK, Conrad TM, Lerman JA, Charusanti P, Polpitiya AD, Adkins JN, Schramm G, Purvine SO, Lopez-Ferrer D, Weitz KK, Eils R, König R, Smith RD, Palsson BØ. Lewis NE, et al. Among authors: adkins jn. Mol Syst Biol. 2010 Jul;6:390. doi: 10.1038/msb.2010.47. Mol Syst Biol. 2010. PMID: 20664636 Free PMC article.

5

Salmonella modulates metabolism during growth under conditions that induce expression of virulence genes.

Kim YM, Schmidt BJ, Kidwai AS, Jones MB, Deatherage Kaiser BL, Brewer HM, Mitchell HD, Palsson BO, McDermott JE, Heffron F, Smith RD, Peterson SN, Ansong C, Hyduke DR, Metz TO, Adkins JN. Kim YM, et al. Among authors: adkins jn. Mol Biosyst. 2013 Jun;9(6):1522-34. doi: 10.1039/c3mb25598k. Epub 2013 Apr 5. Mol Biosyst. 2013. PMID: 23559334 Free PMC article.

6

GIM3E: condition-specific models of cellular metabolism developed from metabolomics and expression data.

Schmidt BJ, Ebrahim A, Metz TO, Adkins JN, Palsson BØ, Hyduke DR. Schmidt BJ, et al. Among authors: adkins jn. Bioinformatics. 2013 Nov 15;29(22):2900-8. doi: 10.1093/bioinformatics/btt493. Epub 2013 Aug 23. Bioinformatics. 2013. PMID: 23975765 Free PMC article.

7

Technologies and approaches to elucidate and model the virulence program of salmonella.

McDermott JE, Yoon H, Nakayasu ES, Metz TO, Hyduke DR, Kidwai AS, Palsson BO, Adkins JN, Heffron F. McDermott JE, et al. Among authors: adkins jn. Front Microbiol. 2011 Jun 2;2:121. doi: 10.3389/fmicb.2011.00121. eCollection 2011. Front Microbiol. 2011. PMID: 21687430 Free PMC article.

8

Studying Salmonellae and Yersiniae host-pathogen interactions using integrated 'omics and modeling.

Ansong C, Deatherage BL, Hyduke D, Schmidt B, McDermott JE, Jones MB, Chauhan S, Charusanti P, Kim YM, Nakayasu ES, Li J, Kidwai A, Niemann G, Brown RN, Metz TO, McAteer K, Heffron F, Peterson SN, Motin V, Palsson BO, Smith RD, Adkins JN. Ansong C, et al. Among authors: adkins jn. Curr Top Microbiol Immunol. 2013;363:21-41. doi: 10.1007/82_2012_247. Curr Top Microbiol Immunol. 2013. PMID: 22886542 Free PMC article. Review.

9

In silico method for modelling metabolism and gene product expression at genome scale.

Lerman JA, Hyduke DR, Latif H, Portnoy VA, Lewis NE, Orth JD, Schrimpe-Rutledge AC, Smith RD, Adkins JN, Zengler K, Palsson BO. Lerman JA, et al. Among authors: adkins jn. Nat Commun. 2012 Jul 3;3:929. doi: 10.1038/ncomms1928. Nat Commun. 2012. PMID: 22760628 Free PMC article.

10

Systems analysis of multiple regulator perturbations allows discovery of virulence factors in Salmonella.

Yoon H, Ansong C, McDermott JE, Gritsenko M, Smith RD, Heffron F, Adkins JN. Yoon H, et al. Among authors: adkins jn. BMC Syst Biol. 2011 Jun 28;5:100. doi: 10.1186/1752-0509-5-100. BMC Syst Biol. 2011. PMID: 21711513 Free PMC article.

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