Pique-Regi R - Search Results

1

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines.

Bell JT, Pai AA, Pickrell JK, Gaffney DJ, Pique-Regi R, Degner JF, Gilad Y, Pritchard JK. Bell JT, et al. Genome Biol. 2011;12(1):R10. doi: 10.1186/gb-2011-12-1-r10. Epub 2011 Jan 20. Genome Biol. 2011. PMID: 21251332 Free PMC article.

2

Preparation of single-cell suspensions from the human placenta.

Garcia-Flores V, Xu Y, Pusod E, Romero R, Pique-Regi R, Gomez-Lopez N. Garcia-Flores V, et al. Nat Protoc. 2023 Mar;18(3):732-754. doi: 10.1038/s41596-022-00772-w. Epub 2022 Nov 30. Nat Protoc. 2023. PMID: 36451054 Free PMC article. Review.

3

Analysis of transcriptional changes in the immune system associated with pubertal development in a longitudinal cohort of children with asthma.

Resztak JA, Choe J, Nirmalan S, Wei J, Bruinsma J, Houpt R, Alazizi A, Mair-Meijers HE, Wen X, Slatcher RB, Zilioli S, Pique-Regi R, Luca F. Resztak JA, et al. Nat Commun. 2023 Jan 16;14(1):230. doi: 10.1038/s41467-022-35742-z. Nat Commun. 2023. PMID: 36646693 Free PMC article.

4

A single-cell atlas of murine reproductive tissues during preterm labor.

Garcia-Flores V, Romero R, Peyvandipour A, Galaz J, Pusod E, Panaitescu B, Miller D, Xu Y, Tao L, Liu Z, Tarca AL, Pique-Regi R, Gomez-Lopez N. Garcia-Flores V, et al. Cell Rep. 2023 Jan 31;42(1):111846. doi: 10.1016/j.celrep.2022.111846. Epub 2023 Jan 3. Cell Rep. 2023. PMID: 36599348 Free PMC article.

5

The amniotic fluid proteome changes with term labor and informs biomarker discovery in maternal plasma.

Bhatti G, Romero R, Gomez-Lopez N, Chaiworapongsa T, Than NG, Theis KR, Galaz J, Gotsch F, Pique-Regi R, Berry SM, Kavdia M, Tarca AL. Bhatti G, et al. Sci Rep. 2023 Feb 23;13(1):3136. doi: 10.1038/s41598-023-28157-3. Sci Rep. 2023. PMID: 36823217 Free PMC article.

6

Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data.

Pique-Regi R, Degner JF, Pai AA, Gaffney DJ, Gilad Y, Pritchard JK. Pique-Regi R, et al. Genome Res. 2011 Mar;21(3):447-55. doi: 10.1101/gr.112623.110. Epub 2010 Nov 24. Genome Res. 2011. PMID: 21106904 Free PMC article.

7

Dissecting the regulatory architecture of gene expression QTLs.

Gaffney DJ, Veyrieras JB, Degner JF, Pique-Regi R, Pai AA, Crawford GE, Stephens M, Gilad Y, Pritchard JK. Gaffney DJ, et al. Genome Biol. 2012 Jan 31;13(1):R7. doi: 10.1186/gb-2012-13-1-r7. Genome Biol. 2012. PMID: 22293038 Free PMC article.

8

DNase I sensitivity QTLs are a major determinant of human expression variation.

Degner JF, Pai AA, Pique-Regi R, Veyrieras JB, Gaffney DJ, Pickrell JK, De Leon S, Michelini K, Lewellen N, Crawford GE, Stephens M, Gilad Y, Pritchard JK. Degner JF, et al. Nature. 2012 Feb 5;482(7385):390-4. doi: 10.1038/nature10808. Nature. 2012. PMID: 22307276 Free PMC article.

9

DNA sequence-dependent compartmentalization and silencing of chromatin at the nuclear lamina.

Zullo JM, Demarco IA, Piqué-Regi R, Gaffney DJ, Epstein CB, Spooner CJ, Luperchio TR, Bernstein BE, Pritchard JK, Reddy KL, Singh H. Zullo JM, et al. Cell. 2012 Jun 22;149(7):1474-87. doi: 10.1016/j.cell.2012.04.035. Cell. 2012. PMID: 22726435 Free article.

10

Bacterial infection remodels the DNA methylation landscape of human dendritic cells.

Pacis A, Tailleux L, Morin AM, Lambourne J, MacIsaac JL, Yotova V, Dumaine A, Danckaert A, Luca F, Grenier JC, Hansen KD, Gicquel B, Yu M, Pai A, He C, Tung J, Pastinen T, Kobor MS, Pique-Regi R, Gilad Y, Barreiro LB. Pacis A, et al. Genome Res. 2015 Dec;25(12):1801-11. doi: 10.1101/gr.192005.115. Epub 2015 Sep 21. Genome Res. 2015. PMID: 26392366 Free PMC article.

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