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Meeting Report: "Metagenomics, Metadata and Meta-analysis" (M3) Workshop at the Pacific Symposium on Biocomputing 2010.
Hirschman L, Sterk P, Field D, Wooley J, Cochrane G, Gilbert J, Kolker E, Kyrpides N, Meyer F, Mizrachi I, Nakamura Y, Sansone SA, Schriml L, Tatusova T, White O, Yilmaz P. Hirschman L, et al. Among authors: yilmaz p. Stand Genomic Sci. 2010 Jun 15;2(3):357-60. doi: 10.4056/sigs.802738. Stand Genomic Sci. 2010. PMID: 21304719 Free PMC article.
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.
Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium; Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T. Bowers RM, et al. Among authors: yilmaz p. Nat Biotechnol. 2017 Aug 8;35(8):725-731. doi: 10.1038/nbt.3893. Nat Biotechnol. 2017. PMID: 28787424 Free PMC article.
UnCoVar: a reproducible and scalable workflow for transparent and robust virus variant calling and lineage assignment using SARS-CoV-2 as an example.
Thomas A, Battenfeld T, Kraiselburd I, Anastasiou O, Dittmer U, Dörr AK, Dörr A, Elsner C, Gosch J, Le-Trilling VTK, Magin S, Scholtysik R, Yilmaz P, Trilling M, Schöler L, Köster J, Meyer F. Thomas A, et al. Among authors: yilmaz p. BMC Genomics. 2024 Jun 28;25(1):647. doi: 10.1186/s12864-024-10539-0. BMC Genomics. 2024. PMID: 38943066 Free PMC article.
Where is VALDO? VAscular Lesions Detection and segmentatiOn challenge at MICCAI 2021.
Sudre CH, Van Wijnen K, Dubost F, Adams H, Atkinson D, Barkhof F, Birhanu MA, Bron EE, Camarasa R, Chaturvedi N, Chen Y, Chen Z, Chen S, Dou Q, Evans T, Ezhov I, Gao H, Girones Sanguesa M, Gispert JD, Gomez Anson B, Hughes AD, Ikram MA, Ingala S, Jaeger HR, Kofler F, Kuijf HJ, Kutnar D, Lee M, Li B, Lorenzini L, Menze B, Molinuevo JL, Pan Y, Puybareau E, Rehwald R, Su R, Shi P, Smith L, Tillin T, Tochon G, Urien H, van der Velden BHM, van der Velpen IF, Wiestler B, Wolters FJ, Yilmaz P, de Groot M, Vernooij MW, de Bruijne M; ALFA study. Sudre CH, et al. Among authors: yilmaz p. Med Image Anal. 2024 Jan;91:103029. doi: 10.1016/j.media.2023.103029. Epub 2023 Nov 19. Med Image Anal. 2024. PMID: 37988921 Free article.
Erratum to: "Comparison of the vessel density measurements of the macula, optical disc, and peri-papillary region between ocular hypertension patients and healthy controls" [Photodiagnosis and Photodynamic Therapy 42 (2023) 103551].
Çomçalı S, Yılmaz PT, Köz ÖG, Coşkun Ç, Çavdarlı C, Güvenç H, Yarangümeli A, Özdemir EY. Çomçalı S, et al. Among authors: yilmaz pt. Photodiagnosis Photodyn Ther. 2023 Dec;44:103778. doi: 10.1016/j.pdpdt.2023.103778. Epub 2023 Sep 26. Photodiagnosis Photodyn Ther. 2023. PMID: 37769431 No abstract available.
127 results