Bafna V - Search Results

1

Sensitive gene fusion detection using ambiguously mapping RNA-Seq read pairs.

Kinsella M, Harismendy O, Nakano M, Frazer KA, Bafna V. Kinsella M, et al. Among authors: bafna v. Bioinformatics. 2011 Apr 15;27(8):1068-75. doi: 10.1093/bioinformatics/btr085. Epub 2011 Feb 16. Bioinformatics. 2011. PMID: 21330288 Free PMC article.

2

A sequence-based filtering method for ncRNA identification and its application to searching for riboswitch elements.

Zhang S, Borovok I, Aharonowitz Y, Sharan R, Bafna V. Zhang S, et al. Among authors: bafna v. Bioinformatics. 2006 Jul 15;22(14):e557-65. doi: 10.1093/bioinformatics/btl232. Bioinformatics. 2006. PMID: 16873520

3

Optimization of primer design for the detection of variable genomic lesions in cancer.

Bashir A, Liu YT, Raphael BJ, Carson D, Bafna V. Bashir A, et al. Among authors: bafna v. Bioinformatics. 2007 Nov 1;23(21):2807-15. doi: 10.1093/bioinformatics/btm390. Epub 2007 Aug 30. Bioinformatics. 2007. PMID: 17766270

4

HapCUT: an efficient and accurate algorithm for the haplotype assembly problem.

Bansal V, Bafna V. Bansal V, et al. Among authors: bafna v. Bioinformatics. 2008 Aug 15;24(16):i153-9. doi: 10.1093/bioinformatics/btn298. Bioinformatics. 2008. PMID: 18689818

5

Designing deep sequencing experiments: detecting structural variation and estimating transcript abundance.

Bashir A, Bansal V, Bafna V. Bashir A, et al. Among authors: bafna v. BMC Genomics. 2010 Jun 18;11:385. doi: 10.1186/1471-2164-11-385. BMC Genomics. 2010. PMID: 20565853 Free PMC article.

6

RAPID detection of gene-gene interactions in genome-wide association studies.

Brinza D, Schultz M, Tesler G, Bafna V. Brinza D, et al. Among authors: bafna v. Bioinformatics. 2010 Nov 15;26(22):2856-62. doi: 10.1093/bioinformatics/btq529. Epub 2010 Sep 24. Bioinformatics. 2010. PMID: 20871107 Free PMC article.

7

A covering method for detecting genetic associations between rare variants and common phenotypes.

Bhatia G, Bansal V, Harismendy O, Schork NJ, Topol EJ, Frazer K, Bafna V. Bhatia G, et al. Among authors: bafna v. PLoS Comput Biol. 2010 Oct 14;6(10):e1000954. doi: 10.1371/journal.pcbi.1000954. PLoS Comput Biol. 2010. PMID: 20976246 Free PMC article.

8

Population sequencing of two endocannabinoid metabolic genes identifies rare and common regulatory variants associated with extreme obesity and metabolite level.

Harismendy O, Bansal V, Bhatia G, Nakano M, Scott M, Wang X, Dib C, Turlotte E, Sipe JC, Murray SS, Deleuze JF, Bafna V, Topol EJ, Frazer KA. Harismendy O, et al. Among authors: bafna v. Genome Biol. 2010;11(11):R118. doi: 10.1186/gb-2010-11-11-r118. Epub 2010 Nov 30. Genome Biol. 2010. PMID: 21118518 Free PMC article.

9

Experimental selection of hypoxia-tolerant Drosophila melanogaster.

Zhou D, Udpa N, Gersten M, Visk DW, Bashir A, Xue J, Frazer KA, Posakony JW, Subramaniam S, Bafna V, Haddad GG. Zhou D, et al. Among authors: bafna v. Proc Natl Acad Sci U S A. 2011 Feb 8;108(6):2349-54. doi: 10.1073/pnas.1010643108. Epub 2011 Jan 24. Proc Natl Acad Sci U S A. 2011. PMID: 21262834 Free PMC article.

10

Combinatorics of the breakage-fusion-bridge mechanism.

Kinsella M, Bafna V. Kinsella M, et al. Among authors: bafna v. J Comput Biol. 2012 Jun;19(6):662-78. doi: 10.1089/cmb.2012.0020. Epub 2012 Apr 16. J Comput Biol. 2012. PMID: 22506505 Free PMC article.

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